make_bulk_matrix_from_files: Create a gene expression matrix to predict dependencies

In Mushriq/mixmap: Test package to share mixmap code

Create a gene expression matrix to predict dependencies

Description

This function creates a gene expression matrix from a list of files, each containing bulk gene expression profiles. It returns a samples-by-genes matrix.

Usage

make_bulk_matrix_from_files(bulk_files, pseudocount = 1)

Arguments

bulk_files	A vector of filenames for gene counts or pre-calculated TPMs.
pseudocount	An arbitrary small number to add before log-transformation (default = 1).

Examples

show_msg("The number of cells is {cell_count}")

Mushriq/mixmap documentation built on Jan. 28, 2024, 7:22 p.m.