fishpaths: fishpaths

In Myfanwy/fishtrackr: A set of functions for analyzing and summarizing acoustic telemetry data

Usage

fishpaths(x, TagID_col, Station_col, Datetime_col = "DateTimeUTC",
  Threshold = 60 * 60)

Arguments

x	a dataframe of detections
TagID_col	column containing unique fish identification codes
Station_col	column containing unique station codes or names
Datetime_col	column containing date and time of detection, in POSIXct format (" \item Thresholddesired time threshold between station visits, in seconds. See details The time threshold allows you to delineate the period of time that detections can be separated from each other at a receiver and still be considered part of the same "stay" at that receiver. The default is 1 hour ('60*60'). If you set Threhold = '60*60*2', that means that after a fish arrives at a receiver, all detections that occur at that receiver within 2 hours of the first arrival are considered part of the same "stay" at that receiver.

dataframe with fishpaths for each tagID fishpaths # Test library(ybp) f <- all69khz_grouped fishpaths(f, f$TagID, f$Station, "DateTimePST", 60*60*2) # time threshold of 2 hours

Myfanwy/fishtrackr documentation built on May 7, 2019, 5:15 p.m.