plot_eqtm: plot_eqtm

Description Usage Arguments Author(s)

View source: R/eqtm_plot.R

Description

This function was setup to perform an expression quantitative trait methylation analysis for methylation and gene expression data obtained from the same samples.

Usage

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plot_eqtm(dmrs_se, meth_data, meth_groups, anno_gr, expr_data, expr_groups,
  united_groups, bm, index, colors = NULL)

Arguments

dmrs_se

A SummarizedExperiment object generated from the eqtm() function

sort.by

What to sort by? ("pval", "cor_coef", "CI95_diff")

volcanoplot

A boolean whether or not to generate a volcano plot (x = correlation, y = -log10(p-value))

Author(s)

Andrew Y.F. Li Yim


ND91/eqtm documentation built on May 17, 2019, 6:22 p.m.