README.md

In NHPatterson/RegCombIMS: Co-registration and combination of imaging mass spectrometry datasets

RegCombIMS

Code accompanying "Co-registration and analysis of multiple imaging mass spectrometry datasets targeting different analytes" Please cite this work if you use this tool in your own analysis.

This repository contains code to demo the analysis pipeline described in "Co-registration and analysis of multiple imaging mass spectrometry datasets targeting different analytes"

RegCombIMS extends Cardinal's excellent data structures for IMS for computational registration tasks using the RNiftyReg library.

Installation

This package can be installed from github in R using the devtools package and following code:

#install Cardinal following instructions at https://cardinalmsi.org/
#install RNiftyReg
install.packages("RNiftyReg")
install.packages("devtools") # if you have not installed "devtools" package
devtools::install_github("nhpatterson/RegCombIMS")

Demo

See demo example combining two datasets

Contact:

Heath Patterson [e-mail]

Please use the GitHub issue tracker for any errors encountered using this tool. I will try to solve them ASAP.

NHPatterson/RegCombIMS documentation built on Feb. 9, 2020, 6:08 p.m.