ModulePlots: Plot modules
In NIHBiSB/CoSync-Test: Analyzing sychonization network
Description
Usage
Arguments
Value
Description
To visualize modules in graph and in heatmap
Usage
1
ModulePlots(x, expr, mColors, thisColor = "blue", cut = 0.3)
Arguments
x
- co-sychronization matrix returned by phaseLockingMatrix, grangerTest or coherenceTest
expr
- expression profile
thisColor
- the color of the module to be plotted
cut
- the threshold for the co-sychronization matrix, extacting submatrix that is bigger than this cutoff, and plot the graph.
modulColors
- color vector return by wgcnaAnalysis
Value
A graph and a heatmap
NIHBiSB/CoSync-Test documentation built on May 7, 2019, 6:02 p.m.
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Description Usage Arguments Value
Description
To visualize modules in graph and in heatmap
Usage
1 | ModulePlots(x, expr, mColors, thisColor = "blue", cut = 0.3)
|
Arguments
x |
- co-sychronization matrix returned by phaseLockingMatrix, grangerTest or coherenceTest |
expr |
- expression profile |
thisColor |
- the color of the module to be plotted |
cut |
- the threshold for the co-sychronization matrix, extacting submatrix that is bigger than this cutoff, and plot the graph. |
modulColors |
- color vector return by wgcnaAnalysis |
Value
A graph and a heatmap
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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