flexgsea_limma: Score genes with limma with a design matrix.
In NKI-CCB/ggsea: Flexible Gene Set Enrichment Analysis
Description
Scores genes by their coefficients in from limma.
The argument y should be a design matrix, as produced by
model.matrix.
For RNA-seq data, use the
EList object produced by the voom function.
Do not call directly, but give as the gene.score.fn argument to
flexgsea.
Usage
1
See Also
Other gene scoring functions: flexgsea_lm,
flexgsea_s2n
NKI-CCB/ggsea documentation built on May 3, 2021, 6:55 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Scores genes by their coefficients in from limma.
The argument y should be a design matrix, as produced by
model.matrix.
For RNA-seq data, use the
EList object produced by the voom function.
Do not call directly, but give as the gene.score.fn argument to
flexgsea.
Usage
1 |
See Also
Other gene scoring functions: flexgsea_lm,
flexgsea_s2n
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.