NKI-CCB/iTOP: Inferring the Topology of Omics Data

Infers a topology of relationships between different datasets, such as multi-omics and phenotypic data recorded on the same samples. We based this methodology on the RV coefficient (Robert & Escoufier, 1976, <doi:10.2307/2347233>), a measure of matrix correlation, which we have extended for partial matrix correlations and binary data (Aben et al., 2018, <doi:10.1101/293993>).

Getting started

Package details

AuthorNanne Aben
MaintainerNanne Aben <[email protected]>
LicenseGPL-2
Version1.0.2
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("NKI-CCB/iTOP")
NKI-CCB/iTOP documentation built on June 13, 2018, 12:14 p.m.