Man pages for NKInstinct/seqHelpers
Helper Functions for Bulk RNA-Seq Analysis
| bubblePlot | Generate pathfindR-like bubble plot from pathfindR results |
| dge_CleanPathfinder | Clean up the output of dge_RunPathfinder to make nicer bubble... |
| dge_CollapseKeggLists | Collapse a set of KeggGeneLists into one list of vectors |
| dge_GetKeggGeneLists | Get a list of all significantly altered genes in all... |
| dge_GetMatrix | Get CPM-corrected count matrix out of a DGEList, then filter... |
| dge_OneFactor | Perform Differential Gene Expression analysis on a one-factor... |
| dge_PlotGOHeatmap | Plot all significant genes in a heatmap, with GO-annotated... |
| dge_PlotHeatmap | Plot CPM heatmap with sensible defaults |
| dge_PrepKeggData | Convert DEG results tables to something Pathview can work... |
| dge_RunPathfinder | Run pathfindR analysis on output from dge_OneFactor |
| plotKEGG | Create a KEGG pathway diagram with DEG data overlay. |
