dge_PlotHeatmap: Plot CPM heatmap with sensible defaults

In NKInstinct/seqHelpers: Helper Functions for Bulk RNA-Seq Analysis

Plot CPM heatmap with sensible defaults

Description

Useful for getting a quick heatmap out of the output of dge_GetMatrix

Usage

dge_PlotHeatmap(
  mat,
  scale = "row",
  cluster_rows = TRUE,
  show_cluster_rows = FALSE,
  ...
)

Arguments

mat	A matrix, likely the output of dge_GetMatrix() (not neccesarily, though).
scale	Arg for ggheatmap, defaulting to "row" (gene-wise)
cluster_rows	Arg for ggheatmap, defaulting to TRUE (yes, cluster genes)
show_cluster_rows	Arg for ggheatmap, defaulting to FALSE (no, don't print the dendrogram)
...	Additional args to pass to ggheatmap

Value

A ggheatmap object

NKInstinct/seqHelpers documentation built on Aug. 20, 2022, 4:30 a.m.