# Calls each plotting routine in order to plot specific set of inputs used to run Hydra
#
#This is an internal function that isn't exported
#
main_plot_inputs <- function(outPath,inputData){
if(!requireNamespace("igraph",quietly = TRUE)){
stop("Package igraph needed for documentation to work. Please install it from CRAN",call. = F)
}
######################## plot observational data #############################
##############################################################################
plot_Y1N_Biomass_lengthweight_bins(outPath,inputData)
plot_Temperature(outPath,inputData)
plot_CovariateData(outPath,inputData)
plot_observed_Biomass_Catch(outPath,inputData) # currently from atlantis
#plot_Catch() # currently from atlantis
######################### plots fishing stuff ################################
##############################################################################
plot_Selectivities(outPath,inputData)
plot_FishingEffort(outPath,inputData) # exploitation, fishery_q, effort
#plot_Discards_Survival(outPath)
########################## plots biological stuff #############################
##############################################################################
plot_Growth(outPath,inputData)
plot_Fecundity(outPath,inputData)
plot_Maturity(outPath,inputData)
plot_StockRecruitment(outPath,inputData)
plot_Intake(outPath,inputData)
plot_Foodweb(outPath,inputData)
plot_SizePreference_weightRatio(outPath,inputData) & # plot_weightRatio
########################### plots management stuff #############################
##############################################################################
plot_Assessment_Step(outPath,inputData)
#plot_ErrorSources()
#plot_q_Assessment() # which species effect change in Explitation rate
}
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