Description Usage Arguments Examples
This function loads a RPPA slide from MIRACLE using one of
the following as input: a connection object obtained with
rppa.authenticate
together with either
barcode or slideIndex or a securityToken where user
authentication is completly omitted. In addition we need to
specify MIRACLE's URL as baseUrl, specify signal filter
options and optionally correct for block shifts in the
process.
1 2 3 4 |
connection |
RCurl connection object obtained
through |
barcode |
Barcode of the slide |
slideIndex |
Database ID of the slide in MIRACLE |
securityToken |
UUID of the slide used for secure
access without |
baseUrl |
URL pointing to the spotExport controller of the used MIRACLE instance |
filter.diameter |
if true filter spots with diameter > 200 (set to NA) |
filter.negative |
if true filter negative values (set to NA) |
filter.flag |
if true filter flagged values, e.g. where flag property is not 0 (set to NA) |
apply.shifts |
if true apply horizontal and vertical shifts |
1 2 3 4 5 | baseUrl <- "http://192.168.0.1:8080/MIRACLE/spotExport/"
conn <- rppa.authenticate(user="mlist", password="xxx", baseUrl=baseUrl)
rppa.load(connection=conn, slideIndex=1, baseUrl=baseUrl)
rppa.load(connection=conn, barcode="ABCD")
rppa.load(securityToken="abcd-xzft-djfk-2345")
|
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