ctd: Human Embryonic Midbrain cell type data file
In NathanSkene/CTD.human.midbrain.embryonic:
Description
Usage
Format
Source
Description
The processed data for the human embryonic midbrain, ready for use in MAGMA_Celltyping and EWCE
Usage
1
Format
An object of class list of length 2.
Source
The code to prepare the .Rda file file from the marker file is:
library(EWCE)
data(raw_sc_expression_data)
raw_sc_expression_data$exp_CORRECTED = fix.bad.hgnc.symbols(raw_sc_expression_data$exp)
raw_sc_expression_data$exp_CORRECTED_DROPPED = drop.uninformative.genes(exp=raw_sc_expression_data$exp_CORRECTED, level2annot = raw_sc_expression_data$annot$level2class)
fNames = generate.celltype.data(exp=raw_sc_expression_data$exp_CORRECTED_DROPPED,raw_sc_expression_data$annot,"HumanEmbyronicMidbrain")
load(fNames[1])
usethis::use_data(ctd,overwrite=TRUE)
NathanSkene/CTD.human.midbrain.embryonic documentation built on May 24, 2019, 4:08 p.m.
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Description Usage Format Source
Description
The processed data for the human embryonic midbrain, ready for use in MAGMA_Celltyping and EWCE
Usage
1 |
Format
An object of class list of length 2.
Source
The code to prepare the .Rda file file from the marker file is:
library(EWCE)
data(raw_sc_expression_data)
raw_sc_expression_data$exp_CORRECTED = fix.bad.hgnc.symbols(raw_sc_expression_data$exp)
raw_sc_expression_data$exp_CORRECTED_DROPPED = drop.uninformative.genes(exp=raw_sc_expression_data$exp_CORRECTED, level2annot = raw_sc_expression_data$annot$level2class)
fNames = generate.celltype.data(exp=raw_sc_expression_data$exp_CORRECTED_DROPPED,raw_sc_expression_data$annot,"HumanEmbyronicMidbrain")
load(fNames[1])
usethis::use_data(ctd,overwrite=TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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