missingGT_maf_filter: Filter VCF based on number of minor alleles in dataset
In Neato-Nick/mllR:
missingGT_maf_filter R Documentation
Filter VCF based on number of minor alleles in dataset
Description
Filter VCF based on number of minor alleles in dataset
Usage
missingGT_maf_filter(x, min_count = 2, isGTmissing = TRUE)
Arguments
x
A vcfR object
min_count
Minimum number of times a variant's minor allele must be called to avoid being removed
isGTmissing
Remove all variants with missing data (default) or not (FALSE).
Value
VCF filtered by minor allele count and by missingness
Examples
missingGT_maf_filter(vcf_example)
Neato-Nick/mllR documentation built on Aug. 30, 2024, 7:22 a.m.
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| missingGT_maf_filter | R Documentation |
Filter VCF based on number of minor alleles in dataset
Description
Filter VCF based on number of minor alleles in dataset
Usage
missingGT_maf_filter(x, min_count = 2, isGTmissing = TRUE)
Arguments
x |
A vcfR object |
min_count |
Minimum number of times a variant's minor allele must be called to avoid being removed |
isGTmissing |
Remove all variants with missing data (default) or not (FALSE). |
Value
VCF filtered by minor allele count and by missingness
Examples
missingGT_maf_filter(vcf_example)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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