get_contributing_signatures: get_contributing_signatures

In NilsWeng/nilsPaket: What the package does (short line)

Description

Function that finds the minimun number of signatures needed recreated mutational profiles of each cluster to a certain threshold However cant deal with clusters of size = 1. These are removed.

Usage

get_contributing_signatures(ClusterDF, cos_sim_samples_cosmic,
  mutational_matrix, threshold)

Arguments

ClusterDF	Dataframe with cluster information
mutational_matrix	Mutational matrix from mut_mat()
cos_sim_matrix	cosine simililarity matrix
treshold	Treshold for needed cosine similarity between reconstructed and original mutational matrix

Value

DF with main contributing signatures in each cluster

Examples

get_signatre(Cluster,cos_sim_matrix,mutational_matrix,treshold=0.95)

NilsWeng/nilsPaket documentation built on June 5, 2019, 7:50 a.m.