readgeno: Data Input

In Nuvolar/BinMap: Call Marker from SNP Data using Binmap

Description

Read a file in table format from vcf/ped/bed

Usage

readgeno(
  inputfile,
  datatype,
  outputfile,
  screening = FALSE,
  father = "1/1",
  mother = "0/0",
  maf = NA,
  geno = NA,
  mind = NA,
  hwe = NA
)

Arguments

inputfile	input file name
datatype	inputfile type. support vcf/ped/bed
outputfile	output file name
screening	a logical value. use plink to screening
father	support a character vector or a number that father index of sample
mother	support a character vector or a number that father index of sample
maf	if screening == T ,it useful
geno	if screening == T ,it useful
mind	if screening == T ,it useful
hwe	if screening == T ,it useful

Value

data.frame

Nuvolar/BinMap documentation built on Dec. 18, 2021, 4:36 a.m.