vignettes/running_processes_examples.md

In OB7-IRD/t3: Tropical Tuna Treatment

title: "Running processes examples" output: rmarkdown::html_vignette description: | Description of running processes examples. vignette: | %\VignetteIndexEntry{Running processes examples} %\VignetteEncoding{UTF-8} %\VignetteEngine{knitr::knitr} editor_options: chunk_output_type: console

## Process philosophy The Topical Tuna Treatment (T3) aim to provide a support for the data manipulation of tropical tuna surface fisheries. This support can take many different forms and have various objectives associated. For that purpose, T3 can be processes in various ways, depending of what question(s) drive your reflexion. You will find below several examples for running process and help you regarding your personnal work. Furthermore, don't hesitate to take a look on the issues webpage of the package (https://github.com/OB7-IRD/t3/issues) or send a mail to [e-mail] if you need specific support. Furthermore, in the following functions the "database_con" argument refers to an R object which contains connection information with an avdth database. For more detail about connections available check the function documentation. In addition, the argument "output_path" refer to the output directory on your computer. The function associated, "initiate_directory", will create the output structure for the process. ## Running the process step by step Globaly, the T3 process have 3 differents parts that you can run independently from each other. But in some case you could want to run the entire process step by step, for example to "follow" several particular data with accuracy. In the code below, you will find an example of all the process run step by step. The parameters associated are display in the section called "setup". You can modified them to customize the example. If you more information regarding functions arguments take à look to the R function documentation (or in the reference website section https://ob7-ird.github.io/t3/reference/index.html) wzxhzdk:0 ## Shortcut functions Through the following codes, you will be able to run separely each part of the treatment. wzxhzdk:1 ## Global shortcut function The last section presents an example of a function able to run all the t3 process through one command line. Like before, you can "play" with the arguments to customise the function, especially if you want to skip part(s) of the process. wzxhzdk:2

OB7-IRD/t3 documentation built on May 11, 2024, 7:02 a.m.