t3_level2: T3 process level 2

In OB7-IRD/t3: Tropical Tuna Treatment

T3 process level 2

Description

Level 2 of t3 process (samples standardisation).

Usage

t3_level2(
  object_model_data,
  object_full_trips,
  maximum_lf_class = as.integer(500),
  threshold_rf_minus10 = as.integer(500),
  threshold_rf_plus10 = as.integer(500),
  threshold_frequency_rf_minus10 = as.integer(75),
  threshold_frequency_rf_plus10 = as.integer(75),
  threshold_rf_total = as.integer(250),
  log_file = FALSE,
  log_path = NULL,
  log_name = "t3_level2",
  outputs_path = NULL,
  new_directory = NULL,
  integrated_process = FALSE
)

Arguments

object_model_data	Object of classes object_model_data and R6 expected.
object_full_trips	Object of classes full_trips, list_t3 and R6 expected.
maximum_lf_class	Object of type integer expected. Theorical maximum lf class that can occur (all species considerated). By default 500.
threshold_rf_minus10	Object of type integer expected. Threshold limite value for raising factor on individuals category minus 10. By default 500.
threshold_rf_plus10	Object of type integer expected. Threshold limite value for raising factor on individuals category plus 10. By default 500.
threshold_frequency_rf_minus10	Object of type integer expected. Threshold limite frequency value for raising factor on individuals category minus 10. By default 75.
threshold_frequency_rf_plus10	Object of type integer expected. Threshold limite frequency value for raising factor on individuals category plus 10. By default 75.
threshold_rf_total	Object of type integer expected. Threshold limite value for raising factor (all categories). By default 250.
log_file	Object of type logical expected. Initiation or not for log file creation. By default FALSE (no).
log_path	Object of type character expected. Path of the log file directory. By default NULL.
log_name	Object of type character expected. Name of the log file. By default "t3_level2".
outputs_path	Object of class character expected. Outputs path directory. By default NULL.
new_directory	Object of class logical expected. Initiate a new outputs directory of use an existing one. By default NULL.
integrated_process	Object of class logical expected. Indicate if the process is integrated in another (like the one in the function "t3_process"). By default FALSE.

Value

The function a R6 reference object of class "object_full_trips".

OB7-IRD/t3 documentation built on April 23, 2023, 7:34 p.m.