Files in OHDSI/Achilles
Creates descriptive statistics summary for an entire OMOP CDM instance

.Rbuildignore
.github/ISSUE_TEMPLATE.md
.gitignore
.project
.travis.yml
Achilles.Rproj
DESCRIPTION
Dockerfile
NAMESPACE
R/Achilles-internal.R R/Achilles-package.R R/Achilles.R R/AchillesViewResults.R R/TestAchillesCode.R R/TestAchillesViewResultsCode.R R/TestExportCode.R R/addDatasource.R R/exportToJson.R README-impala.md README.md
data/allReports.rda
deploy.sh
docker-compose.yml.sample
docker-run
env_vars.sample
extras/Heel-Rules.html
extras/PackageMaintenance.R
extras/Rule-Drill-Down.html
extras/notes.md
inst/csv/achilles_rule.csv
inst/csv/analysisDetails.csv
inst/csv/derived_analysis_details.csv
inst/csv/rule_drill_down.csv
inst/sql/sql_server/AchillesHeel_v4.sql
inst/sql/sql_server/AchillesHeel_v5.sql
inst/sql/sql_server/Achilles_indices_v5.sql
inst/sql/sql_server/Achilles_v4.sql
inst/sql/sql_server/Achilles_v5.sql
inst/sql/sql_server/ConceptHierarchy_v5.sql
inst/sql/sql_server/export_v4/achillesheel/sqlAchillesHeel.sql
inst/sql/sql_server/export_v4/condition/sqlAgeAtFirstDiagnosis.sql
inst/sql/sql_server/export_v4/condition/sqlConditionTreemap.sql
inst/sql/sql_server/export_v4/condition/sqlConditionsByType.sql
inst/sql/sql_server/export_v4/condition/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/condition/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/conditionera/sqlAgeAtFirstDiagnosis.sql
inst/sql/sql_server/export_v4/conditionera/sqlConditionEraTreemap.sql
inst/sql/sql_server/export_v4/conditionera/sqlLengthOfEra.sql
inst/sql/sql_server/export_v4/conditionera/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/conditionera/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/datadensity/conceptsperperson.sql
inst/sql/sql_server/export_v4/datadensity/recordsperperson.sql
inst/sql/sql_server/export_v4/datadensity/totalrecords.sql
inst/sql/sql_server/export_v4/death/sqlAgeAtDeath.sql
inst/sql/sql_server/export_v4/death/sqlDeathByType.sql
inst/sql/sql_server/export_v4/death/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/death/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/drug/sqlAgeAtFirstExposure.sql
inst/sql/sql_server/export_v4/drug/sqlDaysSupplyDistribution.sql
inst/sql/sql_server/export_v4/drug/sqlDrugTreemap.sql
inst/sql/sql_server/export_v4/drug/sqlDrugsByType.sql
inst/sql/sql_server/export_v4/drug/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/drug/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/drug/sqlQuantityDistribution.sql
inst/sql/sql_server/export_v4/drug/sqlRefillsDistribution.sql
inst/sql/sql_server/export_v4/drugera/sqlAgeAtFirstExposure.sql
inst/sql/sql_server/export_v4/drugera/sqlDrugEraTreemap.sql
inst/sql/sql_server/export_v4/drugera/sqlLengthOfEra.sql
inst/sql/sql_server/export_v4/drugera/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/drugera/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/observation/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v4/observation/sqlLowerLimitDistribution.sql
inst/sql/sql_server/export_v4/observation/sqlObservationTreemap.sql
inst/sql/sql_server/export_v4/observation/sqlObservationValueDistribution.sql
inst/sql/sql_server/export_v4/observation/sqlObservationsByType.sql
inst/sql/sql_server/export_v4/observation/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/observation/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/observation/sqlRecordsByUnit.sql
inst/sql/sql_server/export_v4/observation/sqlUpperLimitDistribution.sql
inst/sql/sql_server/export_v4/observation/sqlValuesRelativeToNorm.sql
inst/sql/sql_server/export_v4/observationperiod/ageatfirst.sql
inst/sql/sql_server/export_v4/observationperiod/agebygender.sql
inst/sql/sql_server/export_v4/observationperiod/cumulativeduration.sql
inst/sql/sql_server/export_v4/observationperiod/observationlength_data.sql
inst/sql/sql_server/export_v4/observationperiod/observationlength_stats.sql
inst/sql/sql_server/export_v4/observationperiod/observationlengthbyage.sql
inst/sql/sql_server/export_v4/observationperiod/observationlengthbygender.sql
inst/sql/sql_server/export_v4/observationperiod/observedbymonth.sql
inst/sql/sql_server/export_v4/observationperiod/observedbyyear_data.sql
inst/sql/sql_server/export_v4/observationperiod/observedbyyear_stats.sql
inst/sql/sql_server/export_v4/observationperiod/periodsperperson.sql
inst/sql/sql_server/export_v4/person/ethnicity.sql
inst/sql/sql_server/export_v4/person/gender.sql
inst/sql/sql_server/export_v4/person/population.sql
inst/sql/sql_server/export_v4/person/race.sql
inst/sql/sql_server/export_v4/person/yearofbirth_data.sql
inst/sql/sql_server/export_v4/person/yearofbirth_stats.sql
inst/sql/sql_server/export_v4/procedure/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v4/procedure/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/procedure/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/procedure/sqlProcedureTreemap.sql
inst/sql/sql_server/export_v4/procedure/sqlProceduresByType.sql
inst/sql/sql_server/export_v4/visit/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v4/visit/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v4/visit/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v4/visit/sqlVisitDurationByType.sql
inst/sql/sql_server/export_v4/visit/sqlVisitTreemap.sql
inst/sql/sql_server/export_v5/achillesheel/sqlAchillesHeel.sql
inst/sql/sql_server/export_v5/condition/sqlAgeAtFirstDiagnosis.sql
inst/sql/sql_server/export_v5/condition/sqlConditionTreemap.sql
inst/sql/sql_server/export_v5/condition/sqlConditionsByType.sql
inst/sql/sql_server/export_v5/condition/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/condition/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/conditionera/sqlAgeAtFirstDiagnosis.sql
inst/sql/sql_server/export_v5/conditionera/sqlConditionEraTreemap.sql
inst/sql/sql_server/export_v5/conditionera/sqlLengthOfEra.sql
inst/sql/sql_server/export_v5/conditionera/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/conditionera/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/datadensity/conceptsperperson.sql
inst/sql/sql_server/export_v5/datadensity/recordsperperson.sql
inst/sql/sql_server/export_v5/datadensity/totalrecords.sql
inst/sql/sql_server/export_v5/death/sqlAgeAtDeath.sql
inst/sql/sql_server/export_v5/death/sqlDeathByType.sql
inst/sql/sql_server/export_v5/death/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/death/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/domainmeta/sqlDomainMeta.sql
inst/sql/sql_server/export_v5/drug/sqlAgeAtFirstExposure.sql
inst/sql/sql_server/export_v5/drug/sqlDaysSupplyDistribution.sql
inst/sql/sql_server/export_v5/drug/sqlDrugTreemap.sql
inst/sql/sql_server/export_v5/drug/sqlDrugsByType.sql
inst/sql/sql_server/export_v5/drug/sqlFrequencyDistribution.sql
inst/sql/sql_server/export_v5/drug/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/drug/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/drug/sqlQuantityDistribution.sql
inst/sql/sql_server/export_v5/drug/sqlRefillsDistribution.sql
inst/sql/sql_server/export_v5/drugera/sqlAgeAtFirstExposure.sql
inst/sql/sql_server/export_v5/drugera/sqlDrugEraTreemap.sql
inst/sql/sql_server/export_v5/drugera/sqlLengthOfEra.sql
inst/sql/sql_server/export_v5/drugera/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/drugera/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/measurement/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v5/measurement/sqlFrequencyDistribution.sql
inst/sql/sql_server/export_v5/measurement/sqlLowerLimitDistribution.sql
inst/sql/sql_server/export_v5/measurement/sqlMeasurementTreemap.sql
inst/sql/sql_server/export_v5/measurement/sqlMeasurementValueDistribution.sql
inst/sql/sql_server/export_v5/measurement/sqlMeasurementsByType.sql
inst/sql/sql_server/export_v5/measurement/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/measurement/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/measurement/sqlRecordsByUnit.sql
inst/sql/sql_server/export_v5/measurement/sqlUpperLimitDistribution.sql
inst/sql/sql_server/export_v5/measurement/sqlValuesRelativeToNorm.sql
inst/sql/sql_server/export_v5/observation/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v5/observation/sqlFrequencyDistribution.sql
inst/sql/sql_server/export_v5/observation/sqlObservationTreemap.sql
inst/sql/sql_server/export_v5/observation/sqlObservationsByType.sql
inst/sql/sql_server/export_v5/observation/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/observation/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/observationperiod/ageatfirst.sql
inst/sql/sql_server/export_v5/observationperiod/agebygender.sql
inst/sql/sql_server/export_v5/observationperiod/cumulativeduration.sql
inst/sql/sql_server/export_v5/observationperiod/observationlength_data.sql
inst/sql/sql_server/export_v5/observationperiod/observationlength_stats.sql
inst/sql/sql_server/export_v5/observationperiod/observationlengthbyage.sql
inst/sql/sql_server/export_v5/observationperiod/observationlengthbygender.sql
inst/sql/sql_server/export_v5/observationperiod/observedbymonth.sql
inst/sql/sql_server/export_v5/observationperiod/observedbyyear_data.sql
inst/sql/sql_server/export_v5/observationperiod/observedbyyear_stats.sql
inst/sql/sql_server/export_v5/observationperiod/periodsperperson.sql
inst/sql/sql_server/export_v5/person/ethnicity.sql
inst/sql/sql_server/export_v5/person/gender.sql
inst/sql/sql_server/export_v5/person/population.sql
inst/sql/sql_server/export_v5/person/race.sql
inst/sql/sql_server/export_v5/person/yearofbirth_data.sql
inst/sql/sql_server/export_v5/person/yearofbirth_stats.sql
inst/sql/sql_server/export_v5/procedure/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v5/procedure/sqlFrequencyDistribution.sql
inst/sql/sql_server/export_v5/procedure/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/procedure/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/procedure/sqlProcedureTreemap.sql
inst/sql/sql_server/export_v5/procedure/sqlProceduresByType.sql
inst/sql/sql_server/export_v5/visit/sqlAgeAtFirstOccurrence.sql
inst/sql/sql_server/export_v5/visit/sqlPrevalenceByGenderAgeYear.sql
inst/sql/sql_server/export_v5/visit/sqlPrevalenceByMonth.sql
inst/sql/sql_server/export_v5/visit/sqlVisitDurationByType.sql
inst/sql/sql_server/export_v5/visit/sqlVisitTreemap.sql
man/achilles.Rd man/achillesHeel.Rd man/addDatasource.Rd man/allReports.Rd man/conceptHierarchy.Rd man/createIndices.Rd man/exportConditionEraToJson.Rd man/exportConditionToJson.Rd man/exportDashboardToJson.Rd man/exportDataDensityToJson.Rd man/exportDeathToJson.Rd man/exportDrugEraToJson.Rd man/exportDrugToJson.Rd man/exportHeelToJson.Rd man/exportMeasurementToJson.Rd man/exportMetaToJson.Rd man/exportObservationPeriodToJson.Rd man/exportObservationToJson.Rd man/exportPersonToJson.Rd man/exportProcedureToJson.Rd man/exportToJson.Rd man/exportVisitToJson.Rd man/fetchAchillesAnalysisResults.Rd man/fetchAchillesHeelResults.Rd man/getAnalysisDetails.Rd man/showReportTypes.Rd tests/testthat.R tests/testthat/test-1-achilles_postgresql.R tests/testthat/test-2-achilles_mssql.R tests/testthat/test-3-achilles_oracle.R tests/testthat/test-4-export_postgresql.R tests/testthat/test-5-export_mssql.R tests/testthat/test-6-export_oracle.R tests/testthat/test-7-achilles_bigquery.R tests/testthat/test-8-export_bigquery.R
OHDSI/Achilles documentation built on July 14, 2018, 2:06 p.m.