insertCdmSources: insertCdmSources

In OHDSI/CdmAtlasCutover: A package to prepare CDM databases for usage in Atlas/WebAPI

Description

insertCdmSources

Usage

insertCdmSources(repoConnectionDetails, cdmSources, sourceIdx = FALSE,
  daimonIdx = FALSE, sqlOnly = FALSE)

Arguments

repoConnectionDetails	A ConnectionDetails object for the OHDSI Repository
cdmSources	A list of CDM sources, built using CDM source object from buildCdmSource
sourceIdx	Boolean to indicate if the SOURCE table uses an identity index for source_id
daimonIdx	Boolean to indicate if the SOURCE_DAIMON table uses an identity index for source_daimon_id
sqlOnly	Generate SQL only, don't execute

Details

Inserts CDM sources into OHDSI Repository. Creates new records in SOURCE and associated records in SOURCE_DAIMON. As these tables may have identity indexes, boolean settings can be used to tell the function to skip instantiating new IDs.

Author(s)

Ajit Londhe

OHDSI/CdmAtlasCutover documentation built on Sept. 28, 2019, 11:14 a.m.