R/CyclopsInBeast.R

In OHDSI/CyclopsInBeast: Cyclops for Fast Likelihood and Gradient Evaluations in BEAST

# Copyright 2021 Observational Health Data Sciences and Informatics
#
# This file is part of CyclopsInBeast
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

#' @keywords internal
"_PACKAGE"

#' @importFrom stats density
#' printCoefmat qchisq rexp rnorm
#' @importFrom rlang .data abort warn inform
#' @importFrom methods is
#' @import BeastJar
#'
NULL

.onLoad <- function(libname, pkgname) {
  beastLocation <- system.file("java/beast.jar", package = "BeastJar")
  rJava::.jpackage(pkgname, lib.loc = libname, nativeLibrary = FALSE, morePaths = beastLocation)
}

.onUnload <- function (libpath) {
  library.dynam.unload("CyclopsInBeast", libpath)
}