extractLoadData: Extract the Eunomia data files and load into a database...

In OHDSI/Eunomia: Standard Dataset Manager for Observational Medical Outcomes Partnership Common Data Model Sample Datasets

Extract the Eunomia data files and load into a database Extract files from a .ZIP file and creates a OMOP CDM database that is then stored in the same directory as the .ZIP file.

Description

Extract the Eunomia data files and load into a database Extract files from a .ZIP file and creates a OMOP CDM database that is then stored in the same directory as the .ZIP file.

Usage

extractLoadData(
  from,
  to,
  dbms = "sqlite",
  cdmVersion = "5.3",
  inputFormat = "csv",
  verbose = FALSE
)

Arguments

from	The path to the .ZIP file that contains the csv CDM source files
to	The path to the .sqlite or .duckdb file that will be created
dbms	The file based database system to use: 'sqlite' (default) or 'duckdb'
cdmVersion	The version of the OMOP CDM that are represented in the archive files.
inputFormat	The format of the files expected in the archive. (csv or parquet)
verbose	Provide additional logging details during execution.

Value

No return value, called to load archive into a database file.

See Also

downloadEunomiaData

Examples

## Not run: 
extractLoadData("c:/strategusData/GiBleed_5.3.zip")

## End(Not run)

OHDSI/Eunomia documentation built on April 25, 2024, 12:14 a.m.