WGCNA_control: Set Parameters for WGCNA Step of Fuzzy Forests

In OHDSI/FuzzyForest: Fuzzy Forests

Description

Creates WGCNA_control object for controlling WGCNA will be carried out.

Usage

WGCNA_control(power = 6, ...)

Arguments

power	Power of adjacency function.
...	Additional arguments. See blockwiseModules for details.

Value

An object of type WGCNA_control.

Note

This work was partially funded by NSF IIS 1251151.

References

Bin Zhang and Steve Horvath (2005) "A General Framework for Weighted Gene Co-Expression Network Analysis", Statistical Applications in Genetics and Molecular Biology: Vol. 4: No. 1, Article 17

Examples

WGCNA_params <- WGCNA_control(p=7, minModuleSize=30, TOMType = "unsigned",
                              reassignThreshold = 0, mergeCutHeight = 0.25,
                              numericLabels = TRUE, pamRespectsDendro = FALSE)

OHDSI/FuzzyForest documentation built on May 7, 2019, 8:26 p.m.