Man pages for OHDSI/OhdsiRTools
Tools Used by Observational Health Data Science and Informatics (OHDSI)

addDefaultConsoleLoggerAdd the default console logger
addDefaultFileLoggerAdd the default file logger
checkUsagePackageCheck all code in a package
clearLoggersRemove all registered loggers
clusterApplyApply a function to a list using the cluster
clusterRequireRequire a package in the cluster
createArgFunctionCreate an argument function
createConceptSetWorkbookSave a set of concept sets expressions, included concepts,...
createConsoleAppenderCreate console appender
createFileAppenderCreate file appender
createLoggerCreate a logger
excludeFromListExclude variables from a list of objects of the same type
formatRFileFormat an R file
formatRFolderFormat all R files in a folder
formatRTextFormat R code
getCohortDefinitionNameGet a cohort definition's name from WebAPI
getCohortGenerationStatusesGet Cohort Generation Statuses
getConceptSetConceptIdsGet Concept Set Concept Ids
getConceptSetNameGet a concept set's name from WebAPI
getLoggersGet all registered loggers
getPriorityVocabKeyGet Priority Vocab Source Key
insertCohortDefinitionInPackageLoad a cohort definition and insert it into this package
insertCohortDefinitionSetInPackageInsert a set of cohort definitions into package
insertConceptSetConceptIdsInPackageInsert a set of concept sets' concept ids into package
insertEnvironmentSnapshotInPackageStore snapshot of the R environment in the package
invokeCohortSetGenerationInvoke the generation of a set of cohort definitions
launchLogViewerLaunch the log viewer Shiny app
layoutParallelLogging layout for parallel computing
layoutSimpleSimple logging layout
layoutStackTraceLogging layout with stacktrace
layoutTimestampLogging layout with timestamp
loadSettingsFromJsonLoad a settings object from a JSON file
logDebugLog a message at the DEBUG level
logErrorLog a message at the ERROR level
logFatalLog a message at the FATAL level
logInfoLog a message at the INFO level
logTraceLog a message at the TRACE level
logWarnLog a message at the WARN level
makeClusterCreate a cluster of nodes for parallel computation
matchInListIn a list of object of the same type, find those that match...
registerLoggerRegister a logger
restoreEnvironmentRestore the R environment to a snapshot
runAndNotifyRun code and send e-mail notification on error, warning, or...
saveSettingsToJsonSave a settings object as JSON file
selectFromListSelect variables from a list of objects of the same type
stopClusterStop the cluster
takeEnvironmentSnapshotTake a snapshot of the R environment
unregisterLoggerUnregister a logger
updateCopyrightYearFileUpdate the copyright year in a R or SQL file
updateCopyrightYearFolderUpdate the copyright year in all R and SQL files in a folder
updatePackageNameUpdate the package name in a R or SQL file
updatePackageNameFolderUpdate the package name in all R and SQL files in a folder
OHDSI/OhdsiRTools documentation built on Dec. 18, 2018, 2:02 p.m.