Files in OHDSI/PhenotypeLibrary
The OHDSI Phenotype Library
.Rbuildignore
.github/workflows/R_CMD_check_Hades.yaml
.github/workflows/R_CMD_check_main_weekly.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/PhenotypeLibrary.R
R/Phenotypes.R
README.md
_pkgdown.yml
compare_versions
deploy.sh
docs/404.html
docs/articles/AutomatedValidityChecksForCohortDefinition.html
docs/articles/CohortDefinitionSubmissionRequirements.html
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary.html
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/core-js-2.5.3/LICENSE
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/core-js-2.5.3/package.json
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/core-js-2.5.3/shim.min.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/htmltools-fill-0.5.8.1/fill.css
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/htmlwidgets-1.5.4/htmlwidgets.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/htmlwidgets-1.6.1/htmlwidgets.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/htmlwidgets-1.6.2/htmlwidgets.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/htmlwidgets-1.6.3/htmlwidgets.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/htmlwidgets-1.6.4/htmlwidgets.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/react-17.0.0/AUTHORS
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/react-17.0.0/LICENSE.txt
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/react-17.0.0/react-dom.min.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/react-17.0.0/react.min.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/react-18.2.0/AUTHORS
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/react-18.2.0/LICENSE.txt
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/react-18.2.0/react-dom.min.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/react-18.2.0/react.min.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.3/reactable.css
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.3/reactable.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.3/reactable.js.map
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.3/reactable.server.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.3/reactable.server.js.LICENSE.txt
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.3/reactable.server.js.map
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.3/reactable.yaml
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.css
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.js.map
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.server.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.server.js.LICENSE.txt
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.server.js.map
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.yaml
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-binding-0.3.0/reactable.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-binding-0.4.3/reactable.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactable-binding-0.4.4/reactable.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactwidget-1.0.0/react-tools.js
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactwidget-1.0.0/react-tools.js.map
docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary_files/reactwidget-2.0.0/react-tools.js
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary.html
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/core-js-2.5.3/LICENSE
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/core-js-2.5.3/package.json
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/core-js-2.5.3/shim.min.js
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/htmltools-fill-0.5.8.1/fill.css
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/htmlwidgets-1.6.2/htmlwidgets.js
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/htmlwidgets-1.6.3/htmlwidgets.js
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/htmlwidgets-1.6.4/htmlwidgets.js
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/react-17.0.0/AUTHORS
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/react-17.0.0/LICENSE.txt
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/react-17.0.0/react-dom.min.js
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/react-17.0.0/react.min.js
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/react-18.2.0/AUTHORS
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/react-18.2.0/LICENSE.txt
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/react-18.2.0/react-dom.min.js
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/react-18.2.0/react.min.js
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.css
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.js
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.js.map
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.server.js
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.server.js.LICENSE.txt
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.server.js.map
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/reactable-0.4.4/reactable.yaml
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/reactable-binding-0.4.4/reactable.js
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/reactwidget-1.0.0/react-tools.js
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/reactwidget-1.0.0/react-tools.js.map
docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary_files/reactwidget-2.0.0/react-tools.js
docs/articles/GuidanceOnClinicalDescriptionForConditionPhenotypes.html
docs/articles/GuidanceOnCohortDefinitionSetRObject.html
docs/articles/GuidanceOnLiteratureReview.html
docs/articles/GuidanceOnPerformingPeerReview.html
docs/articles/GuidanceOnWritingAnEvaluationReport.html
docs/articles/GuidanceOnWritingCohortDefinitionLogicDescription.html
docs/articles/HowToUsePhenotypeLibraryRPackage.html
docs/articles/ReservedWordsWithSpecialMeaningToPhenotypers.html
docs/articles/SubmittedCohortDefinitions.html
docs/articles/ValidityChecksForCohortDefinitions.html
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/PhenotypeLibrary-package.html
docs/reference/Rplot001.png
docs/reference/getPhenotypeLog.html
docs/reference/getPlCohortDefinitionSet.html
docs/reference/getPlConceptDefinitionSet.html
docs/reference/index.html
docs/reference/listPhenotypes.html
docs/reference/updatePhenotypeLog.html
docs/sitemap.xml
extras/PackageMaintenance.R
extras/PostProcess.R
extras/Script to Check Cohort definitions for domain change and vocabulary drift.R
extras/ScriptExampleToBulkImportFromAnotherSource.R
extras/ScriptToRebuildDescription.R
extras/UpdatePhenotypes.R
extras/VP Cipher Mapping.R
inst/Cohorts.csv
inst/ConceptSetsInCohortDefinition.RDS
inst/OrcidLog.csv
inst/cohorts/10.json
inst/cohorts/100.json
inst/cohorts/1000.json
inst/cohorts/1001.json
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man/PhenotypeLibrary-package.Rd
man/getPhenotypeLog.Rd
man/getPlCohortDefinitionSet.Rd
man/getPlConceptDefinitionSet.Rd
man/listPhenotypes.Rd
phenotypeLibrary.Rproj
tests/testthat.R
tests/testthat/test-PhenotypeLibrary.R
vignettes/CohortDefinitionSubmissionRequirements.Rmd
vignettes/CohortDefinitionsInOhdsiPhenotypeLibrary.Rmd
vignettes/ConceptSetDefinitionsInOhdsiPhenotypeLibrary.Rmd
vignettes/GuidanceOnClinicalDescriptionForConditionPhenotypes.Rmd
vignettes/GuidanceOnCohortDefinitionSetRObject.Rmd
vignettes/GuidanceOnLiteratureReview.Rmd
vignettes/GuidanceOnPerformingPeerReview.Rmd
vignettes/GuidanceOnWritingAnEvaluationReport.Rmd
vignettes/GuidanceOnWritingCohortDefinitionLogicDescription.Rmd
vignettes/HowToUsePhenotypeLibraryRPackage.Rmd
vignettes/ReservedWordsWithSpecialMeaningToPhenotypers.Rmd
vignettes/SubmittedCohortDefinitions.Rmd
vignettes/ValidityChecksForCohortDefinitions.Rmd
vignettes/ValidityChecksForCohortDefinitions.pdf
