execute: Execute the validation study
In OHDSI/SkeletonPredictionValidationStudy: Add the title of the package here

View source: R/main.R

execute

R Documentation

Execute the validation study

Description

Execute the validation study

Usage

execute(
  databaseDetails,
 
    restrictPlpDataSettings = PatientLevelPrediction::createRestrictPlpDataSettings(sampleSize
    = NULL),
  validationSettings = PatientLevelPrediction::createValidationSettings(recalibrate =
    NULL),
  outputFolder,
  createCohorts = T,
  runValidation = T,
  packageResults = T,
  minCellCount = 5,
  logSettings = PatientLevelPrediction::createLogSettings(verbosity = "INFO", logName =
    "validatePLP")
)

Arguments

`databaseDetails`	Database details for the validation created using `PatientLevelPrediction::createDatabaseDetails()`
`restrictPlpDataSettings`	Extras data settings such as sampling created using `PatientLevelPrediction::createRestrictPlpDataSettings()`
`validationSettings`	Settings for the validation such as whether to recalibrate
`outputFolder`	Name of local folder to place results; make sure to use forward slashes (/)
`createCohorts`	Whether to create the cohorts for the study
`runValidation`	Whether to run the valdiation models
`packageResults`	Whether to package the results (after removing sensitive details)
`minCellCount`	The min count for the result to be included in the package results
`logSettings`	Settings for the logging created using `PatientLevelPrediction::createLogSettings()`