run_deterministic_comparison_iran: Specific deterministic model run for Iran with timing of...
In OJWatson/iran-ascertainment: Analysis of COVID-19 mortality in Iran

run_deterministic_comparison_iran

R Documentation

Specific deterministic model run for Iran with timing of Delta included

Description

Specific deterministic model run for Iran with timing of Delta included

Usage

run_deterministic_comparison_iran(
  data,
  squire_model,
  model_params,
  model_start_date = "2020-02-02",
  obs_params = list(phi_cases = 0.1, k_cases = 2, phi_death = 1, k_death = 2, exp_noise
    = 1e+06),
  forecast_days = 0,
  save_history = FALSE,
  return = "ll"
)

Arguments

`data`	to fit to.
`squire_model`	A squire model to use
`model_params`	Squire model parameters. Created from a call to one of the `parameters_<type>_model` functions.
`model_start_date`	Date to run model simulations from
`obs_params`	List of parameters used for comparing model to data
`forecast_days`	Days ahead to include in output
`save_history`	Whether to save full history. Default = FALSE
`return`	Set return depending on what is needed. 'full' and "sample" gives the entire output, 'll' gives the log-likelihood