NEWS.md

In OVCARE/nanostringr: Performs Quality Control, Data Normalization, and Batch Effect Correction for 'NanoString nCounter' Data

nanostringr 0.4.1

• Fix warning regarding old-style CITATION
• Add ORCID to package authors
• Use GitHub Actions for pkgdown site
• use stricter R CMD check standard workflow
• decrease package dependencies: removed epiR, forcats, tibble from Imports, moved magrittr to Suggests

nanostringr 0.4.0

• new normalize_pools() function to use common pool samples to correct for batch effects when normalizing
• new normalize_random() function to use randomly selected samples as the reference for refMethod()

nanostringr 0.3.0

• fix calculation of genes detected so that the limit of detection is compared in parallel to each sample's counts instead of being recycled, #20

• use GitHub Actions for CI, replacing Travis and Appveyor

• add gene label "PC_1" for checking smallest positive control

• more robust extraction of numeric concentrations from PC gene labels

nanostringr 0.2.0

• use RCC file names in parsed data of read_rcc(). Also rename gene name CD3E to CD3e for compatibility purposes

• update roxygen

• remove Rplots.pdf generated from tests, removed deprecated context()

nanostringr 0.1.4

• reduce package dependencies from Imports

• remove old packages from Suggests

• performance gains in refMethod()

• raw parameter in NanoStringQC() now accepts tibbles

nanostringr 0.1.3

• check for presence of "Positive" and "Negative" genes in NanoStringQC()

• remove most code lints

• unit tests for read_rcc() and internal functions check_colnames(), check_genes()

• fix bug using NanoStringQC() for single sample data

nanostringr 0.1.2

• sort sample names in HLD and OVD cohorts by numeric order, not lexicographic order

• tidy up code in HKnorm()

• use tidy evaluation in NanostringQC()

• use vapply() over sapply() for input checking functions

nanostringr 0.1.1

• update citation to link to PLOS paper

nanostringr 0.1.0

• New submission to CRAN accepted on March 15, 2019

OVCARE/nanostringr documentation built on Aug. 28, 2023, 1:26 p.m.