Files in OceaneCsn/AraNetBench
Evaluates an inferred regulatory network against state of the art interaction databases in Arabidopsis thaliana
.Rbuildignore
.gitignore
AraNetBench.Rproj
DESCRIPTION
LICENSE.md
NAMESPACE
R/draw_evaluated_Network.R
R/evaluateNetwork.R
R/flatten_edges.R
R/test_validation_rate.R
README.md
_pkgdown.yml
data/abiotic_stress_Heat_genes_net.rda
data/regulators.rda
data/validated_edges.rda
dev/create_example_net.R
dev/create_nodes_data.R
dev/create_validation_data.R
dev/dev.R
dev/usingOnMyNet.R
docs/404.html
docs/LICENSE.html
docs/Network.png
docs/articles/Using-AraNetBench.html
docs/articles/Using-AraNetBench_files/figure-html/unnamed-chunk-5-1.png
docs/articles/Using-AraNetBench_files/figure-html/unnamed-chunk-7-1.png
docs/articles/Using-AraNetBench_files/figure-html/unnamed-chunk-8-1.png
docs/articles/Using-AraNetBench_files/header-attrs-2.13/header-attrs.js
docs/articles/Using-AraNetBench_files/header-attrs-2.9/header-attrs.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/draw_evaluated_network-1.png
docs/reference/draw_evaluated_network.html
docs/reference/evaluate_network.html
docs/reference/flatten_edges.html
docs/reference/index.html
docs/reference/test_validation_rate-1.png
docs/reference/test_validation_rate.html
index.md
man/draw_evaluated_network.Rd
man/evaluate_network.Rd
man/flatten_edges.Rd
man/test_validation_rate.Rd
vignettes/.gitignore
vignettes/Network.png
vignettes/Using-AraNetBench.Rmd
