flatten_edges: Deals with grouped nodes of a network
In OceaneCsn/AraNetBench: Evaluates an inferred regulatory network against state of the art interaction databases in Arabidopsis thaliana
View source: R/flatten_edges.R
flatten_edges R Documentation
Deals with grouped nodes of a network
Description
The line :
from mean_ATGSJHKS-ATGODLKSL to ATGDHJKHK
becomes :
from ATGSJHKS to ATGDHJKHK
from ATGODLKSL to ATGDHJKHK
Usage
flatten_edges(net)
Arguments
net
network containing grouped regulators,
in the form of a dataframe of edges. It must contain a column
named 'from' and a column names 'to'n with the AGI of the genes.
The grouped nodes must have the format mean_AGI1-AGI2, such as
returned by the inference in DIANE
Value
dataframe of edges with duplicated edges for
grouped regulators
Examples
data("abiotic_stress_Heat_genes_net")
flatten_edges(abiotic_stress_Heat_genes_net)
OceaneCsn/AraNetBench documentation built on May 22, 2022, 12:43 p.m.
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View source: R/flatten_edges.R
| flatten_edges | R Documentation |
Deals with grouped nodes of a network
Description
The line : from mean_ATGSJHKS-ATGODLKSL to ATGDHJKHK becomes : from ATGSJHKS to ATGDHJKHK from ATGODLKSL to ATGDHJKHK
Usage
flatten_edges(net)
Arguments
net |
network containing grouped regulators, in the form of a dataframe of edges. It must contain a column named 'from' and a column names 'to'n with the AGI of the genes. The grouped nodes must have the format mean_AGI1-AGI2, such as returned by the inference in DIANE |
Value
dataframe of edges with duplicated edges for grouped regulators
Examples
data("abiotic_stress_Heat_genes_net")
flatten_edges(abiotic_stress_Heat_genes_net)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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