plotObsVsPred: plotObsVsPred

In Open-Systems-Pharmacology/TLF-Library: TLF Library

plotObsVsPred

Description

Producing observed vs predicted plots

Usage

plotObsVsPred(
  data,
  metaData = NULL,
  dataMapping = NULL,
  plotConfiguration = NULL,
  foldDistance = NULL,
  smoother = NULL,
  plotObject = NULL
)

Arguments

data	A data.frame to use for plot.
metaData	A named list of information about data such as the dimension and unit of its variables.
dataMapping	A ObsVsPredDataMapping object mapping x, y and aesthetic groups to their variable names of data.
plotConfiguration	An optional ObsVsPredConfiguration object defining labels, grid, background and watermark.
foldDistance	Numeric values of fold distance lines to display in log plots. This argument is internally translated into lines field of dataMapping. Caution: this argument is meant for log scaled plots and since fold distance is a ratio it is expected positive. In particular, line of identity corresponds to a foldDistance of 1.
smoother	Optional name of smoother function: "loess" for loess regression "lm" for linear regression
plotObject	An optional ggplot object on which to add the plot layer

Value

A ggplot object

See Also

Other molecule plots: plotBoxWhisker(), plotCumulativeTimeProfile(), plotDDIRatio(), plotGrid(), plotHistogram(), plotObservedTimeProfile(), plotPKRatio(), plotPieChart(), plotQQ(), plotResVsPred(), plotResVsTime(), plotSimulatedTimeProfile(), plotTimeProfile(), plotTornado()

Examples

# Produce Obs vs Pred plot
obsVsPredData <- data.frame(x = c(1, 2, 1, 2, 3), y = c(5, 0.2, 2, 3, 4))

plotObsVsPred(data = obsVsPredData, dataMapping = ObsVsPredDataMapping$new(x = "x", y = "y"))

# Produce Obs vs Pred plot with linear regression
plotObsVsPred(
  data = obsVsPredData,
  dataMapping = ObsVsPredDataMapping$new(x = "x", y = "y"),
  smoother = "lm"
)

# Produce Obs vs Pred plot with user-defined fold distance lines
plotObsVsPred(
  data = obsVsPredData,
  dataMapping = ObsVsPredDataMapping$new(x = "x", y = "y"),
  plotConfiguration = ObsVsPredPlotConfiguration$new(
    xScale = Scaling$log, xAxisLimits = c(0.05, 50),
    yScale = Scaling$log, yAxisLimits = c(0.05, 50)
  ),
  foldDistance = c(1, 10)
)

Open-Systems-Pharmacology/TLF-Library documentation built on Feb. 8, 2025, 11:22 a.m.