mark_transform: mark_transform Function

In OpenBioMaps/obm.r: OpenBioMaps API interface for R

mark_transform Function

Description

Import a csv file and transform to Mark input file ./mark_transform.R –file foo.csv [–sep , –quote \' ... ]

Usage

mark_transform(
  file = NULL,
  data = NULL,
  csv.sep = NULL,
  csv.quote = NULL,
  write_output_files = T,
  na.values = "",
  na.drop = F
)

Arguments

file	A CSV or Excel file path
data	Optional data.frame instead of input file
csv.sep	CSV separator string. Default is autodetect
csv.quote	CSV quote string. Default is autodetect
write_output_files	Write all outputs to separated files
na.values	Replace specified characters to NA, read.csv->na.strings
na.drop	Skip error evaluation of lines where control-column value is empty

Examples

mark_transform('maculinea_2021.07.19.csv')

OpenBioMaps/obm.r documentation built on Feb. 22, 2023, 5:47 p.m.