arenosa: arenosa

In OpenIntroStat/openintro: Datasets and Supplemental Functions from 'OpenIntro' Textbooks and Labs

arenosa

Description

Published results used RNA-Seq to investigate how cold responsiveness differs in two populations of A. arenosa: TBG (collected from Triberg, Germany) and KA (collected from Kasparstein, Austria). Each row corresponds to a gene; the first column contains the gene name; other columns correspond to expression measured in a plant sample. Three plants of each population were exposed to cold (vernalized, denoted by v), and three were not (non-vernalized, denoted by nv). Expression was measured in gene counts (i.e. the number of RNA transcripts present in a sample); the data were then normalized to allow comparison between samples.

Usage

arenosa

Format

A tibble with 1088 rows and 13 variables:

gene.name

a character vector

ka.nv.1

a numeric vector

ka.nv.2

a numeric vector

ka.nv.3

a numeric vector

ka.v.1

a numeric vector

ka.v.2

a numeric vector

ka.v.3

a numeric vector

tbg.nv.1

a numeric vector

tbg.nv.2

a numeric vector

tbg.nv.3

a numeric vector

tbg.v.1

a numeric vector

tbg.v.2

a numeric vector

tbg.v.3

a numeric vector

Source

K Bomblies Harvard University lab.

References

Pierre Baduel, Brian Arnold, Cara M. Weisman, Ben Hunter, Kirsten Bomblies, Habitat-Associated Life History and Stress-Tolerance Variation in Arabidopsis arenosa, Plant Physiology, Volume 171, Issue 1, May 2016, Pages 437–451 https://doi.org/10.1104/pp.15.01875https://doi.org/10.1104/pp.15.01875

OpenIntroStat/openintro documentation built on July 4, 2025, 4:33 p.m.