Man pages for Oshlack/missMethyl
Analysing Illumina HumanMethylation BeadChip Data
| contrasts.varFit | Compute contrasts for a varFit object. |
| densityByProbeType | Plot the beta value distributions of the Infinium I and II... |
| getAdj | Extract values adjusted for unwanted variation by RUVm |
| getINCs | Extract intensity data for Illumina negative controls found... |
| getLeveneResiduals | Obtain Levene residuals |
| getMappedEntrezIDs | Get mapped Entrez Gene IDs from CpG probe names |
| gometh | Gene ontology testing for Ilumina methylation array data |
| goregion | Gene ontology testing of DMRs for Ilumina methylation array... |
| gsameth | Generalised gene set testing for Illumina's methylation array... |
| gsaregion | Generalised gene set testing for Illumina's methylation array... |
| gsaseq | Generalised gene set testing for RNA-seq data |
| missMethyl-package | Introduction to the missMethyl package |
| RUVadj | RUV adjust |
| RUVfit | Remove unwanted variation when testing for differential... |
| SWAN | Subset-quantile Within Array Normalisation for Illumina... |
| topGSA | Get table of top 20 enriched pathways |
| topRUV | Table of top-ranked differentially methylated CpGs obatained... |
| topVar | Table of top-ranked differentially variable CpGs |
| varFit | Testing for differential variability |
