Man pages for OxWearables/epicoda
Supports epidemiological analyses using compositional exposure variables
| alr_trans | Alr transformation |
| alter_order_comp_labels | Alter order of compositional column labels. |
| change_composition | Change composition |
| clr_trans | Clr transformation |
| clr_trans_inv | Clr inversion |
| comp_mean | Compositional mean |
| comp_model | Statistical models with compositional exposure variables |
| create_transformation_matrix | Create transformation matrix from clr to ilr pivot... |
| forest_plot_comp | Produce a forest plot of model predictions |
| generate_fixed_values | Generates list of fixed_values based on mean/modal values in... |
| get_cm_from_model | Extract compositional mean from model object |
| get_dataset_from_model | Extract dataset from model object |
| gm | Geometric mean |
| ilr_trans | ilr_trans: Performs ilr transformations using pivot... |
| ilr_trans_inv | ilr_trans_inv: Inverts ilr transformation (pivot coordinates) |
| make_new_data | make_new_data: Generates a new dataset varying in the... |
| Mode | Mode |
| normalise_comp | Normalise input data |
| plot_density_ternary | plot_density_ternary: Plot data density on a ternary plot |
| plot_prediction_region_ternary | plot_prediction_region_ternary: Plot predictive confidence... |
| plot_transfers | plot_transfers: Plots model predictions. |
| predict_fit_and_ci | Predict fit and confidence interval |
| process_axis_label | Process axis labels |
| process_model_type | Process model argument |
| process_units | Process units argument |
| process_zeroes | Process zeroes argument |
| prompt_scale | Prompt scale of axes depending on model type |
| rescale_comp | Return output data on correct scale |
| rescale_det_limit | Rescale det_limit |
| simdata | Example compositional data |
| tab_coefs | Tabulate model using ilr pivot coordinate method |
| tab_covariate_coefs | Tabulate coefficients associated with covariates |
| tmat | Create transformation matrix from clr to ilr pivot... |
| transf_labels | Create columns headings for after the transformation. |
| transform_comp | Transform compositional variables to ilr (pivot), alr or clr... |
| vary_part_of_interest | Varies part of interest. |
| vector_to_sum | Create sum from a vector |
| zero_range | Determine if range of vector is effectively zero. |
