Man pages for OxfordCMS/OCMS_Utility
Utility functions for OCMS
| adjust_mat_pval | adjust_mat_pval |
| aggregate_count | aggregate_count |
| aggregateCount | aggregateCount |
| alpha_diversity | alpha_diversity |
| annotated_dendrogram | annotated_dendrogram |
| asv_example | Example ASV counts table |
| bcdissimilarity | bcdissimilarity |
| clr | clr |
| compare_cor_ci | compare_cor_ci |
| convert_platemap | convert_platemap |
| dissimilarity | dissimilarity |
| dss_example | expected abundance and annotation for zymobioimics samples |
| featurebox | featurebox boxplot expression/abundance values of a... |
| filter_feature | filter_feature.R |
| filterFeature | filterFeature.R |
| get_palette | get_palette |
| getPalette | getPalette |
| get_shortnames | get_shortnames return the shortnames of taxonomy labels |
| getVE | getVE |
| hello | Hello, World! |
| metadata_sparsity | metadata_sparsity |
| metfile_init | function to initiate a metadata file from dada2 db file |
| nsample_by_var | nsample_by_var |
| OCMSutility-package | OCMSutility: Utility functions for OCMS |
| pca_by_var | pca_by_var |
| pcoa_by_var | pcoa_by_var |
| plot_pca | plot_pca |
| plotPCA | plotPCA |
| plot_pcoa | plot_pcoa |
| plotPCoA | plotPCoA *[Deprecated]* This is a simple PCoA function that... |
| plotSunburst | plotSunburst |
| prevalence_abundance | prevalence_abundance return a list that contains a dataframe... |
| rarefaction | rarefaction |
| reannotate_tax | reannotate_tax |
| reannotateTax | reannotateTax |
| relab | relab |
| remove_geom | remove_geom |
| stacked_barchart | stacked_barchart stacked barchart of the top_n features in a... |
| sym_mat2df | sym_mat2df |
| top_taxa | top_taxa |
| true_pos_rate | true_pos_rate |
| truePosRate | truePosRate |
| zymobiomics | expected abundance and annotation for zymobioimics samples |
