df_method_expansion: Expansion and Species composition of a fishing method
In PIFSCstockassessments/expalg.cie: Expansion Algorithm

df_method_expansion

R Documentation

Expansion and Species composition of a fishing method

Description

Expansion and Species composition of a fishing method

Usage

df_method_expansion(
  year,
  pool_f,
  species,
  bl,
  bl2,
  bl_unknown_method,
  bl_unknown_fished,
  bl_known_fished,
  p1,
  p2,
  sample_days,
  days,
  interviews,
  interviews_raw,
  catch,
  catch_raw,
  method_index,
  method_key,
  ports_refer,
  reference
)

Arguments

`year`	year of the expansion
`pool_f`	whether to pool interviews when fewer than 3 are available for a domain
`species`	a vector of species or all species (when species = NA)
`bl`	counts of boat log entries with known fishing method for each domain ([PORT_FK, TYPE_OF_DAY, METHOD_FK, CHARTER_F])
`bl2`	squared counts of boat log entries with known fishing method for each domain ([PORT_FK, TYPE_OF_DAY, METHOD_FK, CHARTER_F])
`bl_unknown_method`	counts of boat log entries with unknown fishing method for each domain ([PORT_FK, TYPE_OF_DAY, CHARTER_F])
`bl_unknown_fished`	counts of boat log entries with unknown fishing status for each domain ([PORT_FK, TYPE_OF_DAY, CHARTER_F])
`bl_known_fished`	= counts of boat log entries with known fishing status for each domain ([PORT_FK, TYPE_OF_DAY, CHARTER_F])
`p1`	adjustment factors to account for missed vessels outside of shift times for each domain ([PORT_FK, METHOD_FK, CHARTER_F])
`p2`	adjustment factor to account for vessels outside of the sampled ports
`sample_days`	the number of sample days for each domain ([PORT_FK, TYPE_OF_DAY])
`days`	the number of calendar days for each domain ([TYPE_OF_DAY])
`interviews`	interviews for the expansion period
`interviews_raw`	all interviews for all years, for use when pooling
`catch`	interview catch data for the expansion period
`catch_raw`	interview catch data for all years
`method_index`	vector index of the current method
`method_key`	database key of the current method
`ports_refer`	vector to convert port keys to port indices
`reference`	= reference values for the current method