Man pages for PLJV/OpenIMBCR
OpenIMBCR

AICcalculate AIC from a likelihood function optimization...
AICccalculate AICc from a likelihood function optimization...
akaike_predicttesting : us Akaike weights to predict across a series of...
akaike_weight_predictionstesting : accepts a list of akaike predictions (as returned...
akaike_weightscalculate Akaike weights from a vector of AIC values
BICcalculated BIC from a likelihood function optimization...
binary_reclassifypreform a binary reclassification on an input raster, with...
birdcode_fieldnamehidden function that greps for four-letter-codes
buffer_grid_unitgenerate a square buffer around a single input feature
buildUnmarkedDistanceDfaccepts a named raster stack of covariates, an IMBCR...
build_unmarked_gdsaccepts a formatted IMBCR SpatialPointsDataFrame and builds...
calc_day_of_yearcalculate day-of-year for a given IMBCR spatial data.frame
calc_dist_binsaccepts a Spatial*DataFrame object with a distance...
calc_interpatch_distancehidden function that will calculate interpatch distance using...
calc_kestimates a K parameter (upper-bound of integration) as a...
calc_lat_loncalculate the latitude and longitude of feature centroids in...
calc_meanshorthand mean calculation function
calc_mean_patch_areahidden function that will use SDMTools to calculate the mean...
calc_patch_counthidden function that will use SDMTools to calculate the...
calc_route_centroidshidden function that calculates route centroids and attribute...
calc_time_of_daycalculate time-of-day for a given IMBCR spatial data.frame
calc_total_areashorthand total area calculation function
calc_transect_effortcalculate transect effort for a given IMBCR spatial...
commonname_fieldnamehidden function that greps for four-letter-codes
distance_fieldnamehidden function that greps for the distance field name
drop_overlapping_unitshidden function that will calculate the centroids of a USNG...
expitexpit link function
extract_byextract an input raster dataset using polygon feature(s)....
extract_by_large_dftesting: chunk out the task of extracting buffers from a...
extractByTransectextract (and optionally, summarize using the fun= argument)...
imbcrTableToShapefileparse a source CSV (published by BCR) for IMBCR data and...
l_buffer_grid_unitstesting: generalization of the buffer_grid_units function...
l_calc_stattesting: std lapply implementation to benchmark against...
logitlogit link function
mCombinationstesting : hidden function to derive a data.frame of all...
par_buffer_grid_unitstesting: generalization of buffer_grid_unit with parallel...
par_calc_statshorthand function that applies an arbitrary, user-supplied...
parseDetectionsBySpeciesaccepts a SpatialPointsDataFrame of IMBCR data and parses...
parseLayerDsnbuilt-in (hidden) function that will accept the full path of...
parseStationCountsAsOccupancyaccepts a list of data.frames (as returned by...
parseStationLevelMetadataparse relavent metadata for estimating p-detection and leave...
partialPredictbuild a response plot for a given variable using a fitted...
par_unmarked_predicttesting: use the parallel package to predict across a large...
plot_hn_detplot a half-normal detection function from an unmarked object
pool_by_transect_yearhidden function that summarizes imbcr transect covariate data...
readOGRfromPathbuilt-in (hidden) function that will accept the full path of...
recursiveFindFilerecursively find all files in folder (root) that match the...
scrub_imbcr_dfkludging to back-fill any transect stations in an imbcr...
scrub_unmarked_dataframehidden function used to clean-up an unmarked data.frame...
SEcalculate SE from a likelihood function optimization...
spatial_joinshorthand vector extraction function that performs a spatial...
stripCommonNamestrip non-essential characters and spaces from a species...
timeperiod_fieldnamehidden function that greps for the timeperiod field name
transect_fieldnamehidden function that greps for the transect field name
PLJV/OpenIMBCR documentation built on Oct. 17, 2018, 2:13 p.m.