OpenIMBCR

AIC | calculate AIC from a likelihood function optimization... |

AICc | calculate AICc from a likelihood function optimization... |

akaike_predict | testing : us Akaike weights to predict across a series of... |

akaike_weight_predictions | testing : accepts a list of akaike predictions (as returned... |

akaike_weights | calculate Akaike weights from a vector of AIC values |

BIC | calculated BIC from a likelihood function optimization... |

binary_reclassify | preform a binary reclassification on an input raster, with... |

birdcode_fieldname | hidden function that greps for four-letter-codes |

buffer_grid_unit | generate a square buffer around a single input feature |

buildUnmarkedDistanceDf | accepts a named raster stack of covariates, an IMBCR... |

build_unmarked_gds | accepts a formatted IMBCR SpatialPointsDataFrame and builds... |

calc_day_of_year | calculate day-of-year for a given IMBCR spatial data.frame |

calc_dist_bins | accepts a Spatial*DataFrame object with a distance... |

calc_interpatch_distance | hidden function that will calculate interpatch distance using... |

calc_k | estimates a K parameter (upper-bound of integration) as a... |

calc_lat_lon | calculate the latitude and longitude of feature centroids in... |

calc_mean | shorthand mean calculation function |

calc_mean_patch_area | hidden function that will use SDMTools to calculate the mean... |

calc_patch_count | hidden function that will use SDMTools to calculate the... |

calc_route_centroids | hidden function that calculates route centroids and attribute... |

calc_time_of_day | calculate time-of-day for a given IMBCR spatial data.frame |

calc_total_area | shorthand total area calculation function |

calc_transect_effort | calculate transect effort for a given IMBCR spatial... |

commonname_fieldname | hidden function that greps for four-letter-codes |

distance_fieldname | hidden function that greps for the distance field name |

drop_overlapping_units | hidden function that will calculate the centroids of a USNG... |

expit | expit link function |

extract_by | extract an input raster dataset using polygon feature(s).... |

extract_by_large_df | testing: chunk out the task of extracting buffers from a... |

extractByTransect | extract (and optionally, summarize using the fun= argument)... |

imbcrTableToShapefile | parse a source CSV (published by BCR) for IMBCR data and... |

l_buffer_grid_units | testing: generalization of the buffer_grid_units function... |

l_calc_stat | testing: std lapply implementation to benchmark against... |

logit | logit link function |

mCombinations | testing : hidden function to derive a data.frame of all... |

par_buffer_grid_units | testing: generalization of buffer_grid_unit with parallel... |

par_calc_stat | shorthand function that applies an arbitrary, user-supplied... |

parseDetectionsBySpecies | accepts a SpatialPointsDataFrame of IMBCR data and parses... |

parseLayerDsn | built-in (hidden) function that will accept the full path of... |

parseStationCountsAsOccupancy | accepts a list of data.frames (as returned by... |

parseStationLevelMetadata | parse relavent metadata for estimating p-detection and leave... |

partialPredict | build a response plot for a given variable using a fitted... |

par_unmarked_predict | testing: use the parallel package to predict across a large... |

plot_hn_det | plot a half-normal detection function from an unmarked object |

pool_by_transect_year | hidden function that summarizes imbcr transect covariate data... |

readOGRfromPath | built-in (hidden) function that will accept the full path of... |

recursiveFindFile | recursively find all files in folder (root) that match the... |

scrub_imbcr_df | kludging to back-fill any transect stations in an imbcr... |

scrub_unmarked_dataframe | hidden function used to clean-up an unmarked data.frame... |

SE | calculate SE from a likelihood function optimization... |

spatial_join | shorthand vector extraction function that performs a spatial... |

stripCommonName | strip non-essential characters and spaces from a species... |

timeperiod_fieldname | hidden function that greps for the timeperiod field name |

transect_fieldname | hidden function that greps for the transect field name |

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