Man pages for PLJV/OpenIMBCR
OpenIMBCR
| AIC | calculate AIC from a likelihood function optimization... |
| AICc | calculate AICc from a likelihood function optimization... |
| akaike_predict | testing : us Akaike weights to predict across a series of... |
| akaike_weight_predictions | testing : accepts a list of akaike predictions (as returned... |
| akaike_weights | calculate Akaike weights from a vector of AIC values |
| BIC | calculated BIC from a likelihood function optimization... |
| binary_reclassify | preform a binary reclassification on an input raster, with... |
| birdcode_fieldname | hidden function that greps for four-letter-codes |
| buffer_grid_unit | generate a square buffer around a single input feature |
| build_unmarked_distance_df | accepts a named raster stack of covariates, an IMBCR... |
| build_unmarked_gds | accepts a formatted IMBCR SpatialPointsDataFrame and builds... |
| calc_day_of_year | calculate day-of-year for a given IMBCR spatial data.frame |
| calc_dist_bins | accepts a Spatial*DataFrame object with a distance... |
| calc_interpatch_distance | hidden function that will calculate interpatch distance using... |
| calc_k | estimates a K parameter (upper-bound of integration) as a... |
| calc_lat_lon | calculate the latitude and longitude of feature centroids in... |
| calc_mean | shorthand mean calculation function |
| calc_mean_patch_area | hidden function that will use SDMTools to calculate the mean... |
| calc_patch_count | hidden function that will use SDMTools to calculate the... |
| calc_route_centroids | hidden function that calculates route centroids and attribute... |
| calc_time_of_day | calculate time-of-day for a given IMBCR spatial data.frame |
| calc_total_area | shorthand total area calculation function |
| calc_transect_effort | calculate transect effort for a given IMBCR spatial... |
| commonname_fieldname | hidden function that greps for four-letter-codes |
| distance_fieldname | hidden function that greps for the distance field name |
| drop_overlapping_units | hidden function that will calculate the centroids of a USNG... |
| expit | expit link function |
| extract_by | extract an input raster dataset using polygon feature(s).... |
| extract_by_large_df | testing: chunk out the task of extracting buffers from a... |
| generate_fishnet_grid | generate a uniform fishnet grid for a variable polygon... |
| imbcr_df_to_spatial_points | parse a source CSV (published by BCR) for IMBCR data and... |
| l_buffer_grid_units | testing: generalization of the buffer_grid_units function... |
| l_calc_stat | testing: std lapply implementation to benchmark against... |
| logit | logit link function |
| mCombinations | testing : hidden function to derive a data.frame of all... |
| par_buffer_grid_units | testing: generalization of buffer_grid_unit with parallel... |
| par_calc_stat | shorthand function that applies an arbitrary, user-supplied... |
| parseLayerDsn | built-in (hidden) function that will accept the full path of... |
| partialPredict | build a response plot for a given variable using a fitted... |
| par_unmarked_predict | testing: use the parallel package to predict across a large... |
| plot_hn_det | plot a half-normal detection function from an unmarked object |
| polygon_to_fishnet_grid | will generate a uniform vector grid within a polygon.... |
| pool_by_transect_year | hidden function that summarizes imbcr transect covariate data... |
| readOGRfromPath | built-in (hidden) function that will accept the full path of... |
| recursive_find_file | recursively find all files in folder (root) that match the... |
| scrub_imbcr_df | kludging to back-fill any transect stations in an imbcr... |
| scrub_unmarked_dataframe | hidden function used to clean-up an unmarked data.frame... |
| SE | calculate SE from a likelihood function optimization... |
| spatial_join | shorthand vector extraction function that performs a spatial... |
| strip_common_name | strip non-essential characters and spaces from a species... |
| timeperiod_fieldname | hidden function that greps for the timeperiod field name |
| transect_fieldname | hidden function that greps for the transect field name |
