Files in PMassicotte/eemR

Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.gitignore

DESCRIPTION

NAMESPACE

NEWS.md R/absorbance.R R/eem.R R/eemR-package.R R/eem_export.R R/eem_import.R R/eem_inner_filter_effect.R R/eem_lapply.R R/eem_metrics.R R/eem_raman_normalisation.R R/eem_read.R R/eem_read_aqualog.R R/eem_read_cary.R R/eem_read_fluoromax4.R R/eem_read_shimadzu.R R/eem_remove_blank.R R/eem_remove_scattering.R R/eem_utils.R R/zzz.R README.Rmd README.md

_pkgdown.yml

codecov.yml

cran-comments.md

data/absorbance.RData

docs/articles/index.html

docs/articles/introduction.html

docs/articles/introduction_files/figure-html/fig1-1.png

docs/articles/introduction_files/figure-html/fig2-1.png

docs/articles/introduction_files/figure-html/fig3-1.png

docs/articles/introduction_files/figure-html/fig4-1.png

docs/articles/introduction_files/figure-html/fig5-1.png

docs/authors.html

docs/docsearch.json

docs/index.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/news/index.html

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/absorbance-1.png

docs/reference/absorbance.html

docs/reference/eem.html

docs/reference/eem_bind.html

docs/reference/eem_biological_index.html

docs/reference/eem_coble_peaks.html

docs/reference/eem_cut-1.png

docs/reference/eem_cut-2.png

docs/reference/eem_cut-3.png

docs/reference/eem_cut.html

docs/reference/eem_export_matlab.html

docs/reference/eem_extract.html

docs/reference/eem_extract_blank.html

docs/reference/eem_fluorescence_index.html

docs/reference/eem_humification_index.html

docs/reference/eem_inner_filter_effect-1.png

docs/reference/eem_inner_filter_effect-2.png

docs/reference/eem_inner_filter_effect.html

docs/reference/eem_names-set.html

docs/reference/eem_names.html

docs/reference/eem_peaks.html

docs/reference/eem_raman_normalisation-1.png

docs/reference/eem_raman_normalisation-2.png

docs/reference/eem_raman_normalisation.html

docs/reference/eem_read.html

docs/reference/eem_remove_blank-1.png

docs/reference/eem_remove_blank-2.png

docs/reference/eem_remove_blank-3.png

docs/reference/eem_remove_blank-4.png

docs/reference/eem_remove_blank-5.png

docs/reference/eem_remove_blank-6.png

docs/reference/eem_remove_blank.html

docs/reference/eem_remove_scattering-1.png

docs/reference/eem_remove_scattering-2.png

docs/reference/eem_remove_scattering.html

docs/reference/eem_set_wavelengths-1.png

docs/reference/eem_set_wavelengths.html

docs/reference/index.html

docs/reference/plot.eemlist-1.png

docs/reference/plot.eemlist.html

docs/reference/print.eemlist.html

docs/reference/summary.eem.html

docs/reference/summary.eemlist.html

eemR.Rproj

inst/extdata/aqualog/sample4.dat

inst/extdata/cary/scans_day_1/nano.csv

inst/extdata/cary/scans_day_1/sample1.csv

inst/extdata/cary/scans_day_1/sample2.csv

inst/extdata/cary/scans_day_1/sample3.csv

inst/extdata/cary/scans_day_2/blank.csv

inst/extdata/cary/scans_day_2/s1.csv

inst/extdata/custom_cary.csv

inst/extdata/fluoromax4/f1.dat

inst/extdata/fluoromax4/f2.dat

inst/extdata/fluoromax4/f3.dat

inst/extdata/hitachi-f7000-fl/hitachi1.TXT

inst/extdata/hitachi-f7000-fl/hitachi2.TXT

inst/extdata/shimadzu/shimadzu.TXT

inst/images/README-unnamed-chunk-10-1.png

inst/images/README-unnamed-chunk-11-1.png

inst/images/README-unnamed-chunk-12-1.png

inst/images/README-unnamed-chunk-13-1.png

inst/images/README-unnamed-chunk-14-1.png

inst/images/README-unnamed-chunk-4-1.png

inst/images/README-unnamed-chunk-4-2.png

inst/images/README-unnamed-chunk-4-3.png

inst/images/README-unnamed-chunk-4-4.png

inst/images/README-unnamed-chunk-9-1.png

inst/images/README-unnamed-chunk-9-2.png

man-roxygen/template_blank.R man-roxygen/template_details_automatic_blank.R man-roxygen/template_eem.R man-roxygen/template_section_interp2.R man-roxygen/template_summary.R man/absorbance.Rd man/eem.Rd man/eemR-package.Rd man/eem_bind.Rd man/eem_biological_index.Rd man/eem_coble_peaks.Rd man/eem_cut.Rd man/eem_export_matlab.Rd man/eem_extract.Rd man/eem_extract_blank.Rd man/eem_fluorescence_index.Rd man/eem_humification_index.Rd man/eem_inner_filter_effect.Rd man/eem_names-set.Rd man/eem_names.Rd man/eem_peaks.Rd man/eem_raman_normalisation.Rd man/eem_read.Rd man/eem_remove_blank.Rd man/eem_remove_scattering.Rd man/eem_set_wavelengths.Rd man/plot.eemlist.Rd man/print.eemlist.Rd man/summary.eemlist.Rd tests/testthat.R tests/testthat/test-blank-correction.R tests/testthat/test-eem_correction.R tests/testthat/test-eem_export.R tests/testthat/test-metrics.R

vignettes/.gitignore

vignettes/biblio.bib

vignettes/blank.rda

vignettes/custom-import-function.Rmd

vignettes/ife.rda

vignettes/introduction.Rmd

vignettes/matrix.png

vignettes/matrix.svg

PMassicotte/eemR documentation built on Oct. 24, 2021, 7:40 a.m.