motrpac_pilot_processed_datasets: MASIC and MS-GF+ processed data from MoTrPAC pilot project
In PNNL-Comp-Mass-Spec/PlexedPiperTestData: Example of MASIC and MS-GF+ ouput
Description
MASIC output
MS-GF+ output
FASTA file
Description
This is an example data for running TMT processing pipeline.
It is based on MoTrPAC pilot study. The raw files were processed with MASIC to extract ion intensities
and MS-GF+ to identify MS/MS spectra. At this point, the dataset contains only
global data. Phospho will be added in the future.
MASIC output
system.file("extdata/global/masic_output", package = "PlexedPiperTestData")
MS-GF+ output
system.file("extdata/global/msgf_output", package = "PlexedPiperTestData")
FASTA file
NCBI RefSeq FASTA file used for MS/MS searches
system.file("extdata/Rattus_norvegicus_NCBI_RefSeq_2018-04-10.fasta.gz", package = "PlexedPiperTestData")
PNNL-Comp-Mass-Spec/PlexedPiperTestData documentation built on Dec. 18, 2021, 6:37 a.m.
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Description MASIC output MS-GF+ output FASTA file
Description
This is an example data for running TMT processing pipeline. It is based on MoTrPAC pilot study. The raw files were processed with MASIC to extract ion intensities and MS-GF+ to identify MS/MS spectra. At this point, the dataset contains only global data. Phospho will be added in the future.
MASIC output
system.file("extdata/global/masic_output", package = "PlexedPiperTestData")
MS-GF+ output
system.file("extdata/global/msgf_output", package = "PlexedPiperTestData")
FASTA file
NCBI RefSeq FASTA file used for MS/MS searches
system.file("extdata/Rattus_norvegicus_NCBI_RefSeq_2018-04-10.fasta.gz", package = "PlexedPiperTestData")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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