identbhvs: Identify movement behaviours(states) in a population sampled...

In PabloPalencia/trappingmotion: Integrate camera-trapping in movement and behavioural studies.

Identify movement behaviours(states) in a population sampled with camera-traps.

Description

Identify the optimal number of movement behaviours(states) by a k-means clustering. On trappingmotion version 2.0.0 I included a simplified version of 'identbhvs' released on version 1.0.0. Please, use 'identbhvs_mixdist' if you want to combine k-means clustering with log-normal mixture distributions when identifying movement behaviours. Please, explore the presence of outliers in your data before running this function. You can use habitual procedures to identify outliers, such as visualization (boxplot), interquartile range and/or statistical tests (z scores). 'identify_outliers' function from 'rstatix' R package could be also useful.

Usage

identbhvs(dat)

Arguments

dat	A numeric vector of speed data in m/s

Value

A data frame in which the first column includes the speeds, and the second column includes the movement behaviour in which each speed has been classified. A density plot with the speed clustering is obtained by default.

Author(s)

Pablo Palencia

References

Palencia, P., Fernandez-Lopez, J., Vicente, J., & Acevedo, P. (2021). Innovations in movement and behavioural ecology from camera traps: day range as model parameter. Methods in Ecology and Evolution, doi:10.1111/2041-210X.13609

See Also

'meanspeed' function, 'identbhvs_mixdist' function

Examples

dat2<-c(rnorm(80, 2, 0.8), rnorm(80, 0.2, 0.1), rnorm(30, 1, 0.1))
identbhvs(dat2)

PabloPalencia/trappingmotion documentation built on Jan. 27, 2024, 1:44 p.m.