Files in Pandora-IsoMemo/resources
Food Reconstruction Using Isotopic Transferred Signals
.Rbuildignore
.Rprofile
.dockerignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/docker-publish.yml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
Dockerfile
Jenkinsfile
LICENSE.md
NAMESPACE
NEWS.md
R/00-Namespace.R
R/00-config.R
R/00-startApplication.R
R/01-server.R
R/01-ui.R
R/02-copyButtons.R
R/02-dbContent.R
R/02-exportData.R
R/02-fileNotes.R
R/02-foodIntakes.R
R/02-fruitsMatrix.R
R/02-help.R
R/02-modelDiagnosticsPlot.R
R/02-modules-data.R
R/02-outputPlot.R
R/02-oxcal.R
R/02-priorInput.R
R/02-updateListNames.R
R/02-userEstimateGroup.R
R/02-userEstimates.R
R/03-checkForEmptyTables.R
R/03-defaults.R
R/03-doubleMatrix.R
R/03-dummy.R
R/03-extend.R
R/03-fillDiag.R
R/03-fillFromUpload.R
R/03-hideColumn.R
R/03-isoInstalled.R
R/03-listMultiIndex.R
R/03-logging.R
R/03-matrixHelpers.R
R/03-matrixNames.R
R/03-nameEvents.R
R/03-notIn.R
R/03-plotTargets.R
R/03-readString.R
R/03-setCovNames.R
R/03-updateArray.R
R/03-validInput.R
R/03-verbatimTextOutput.R
R/04-createModelCode.R
R/04-distributions.R
R/04-exampleModel.R
R/04-fruitsClass.R
R/04-model.R
R/04-modelDiagnostics.R
R/04-modelSummary.R
R/04-priorGeneration.R
R/04-prognosis.R
R/04-runModel.R
R/04-shinyInputToClass.R
R/zzz.R
README.md
RScripts/00_checkCodeStyle.R
RScripts/ExampleNimble.R
RScripts/RunExample.R
RScripts/shinytest.R
_pkgdown.yml
data/test-TargetValuesMean.xlsx
data/test-TargetValuesUnc.xlsx
inst/app/exampleModels/Five_Sources_Data.rds
inst/app/exampleModels/Roman.rds
inst/app/exampleModels/bear.rds
inst/app/exampleModels/blackBear.rds
inst/app/exampleModels/fruitsExample.Rdata
inst/app/predefinedModels/Black_Bear_Data.zip
inst/app/predefinedModels/Brown_Bear_Data.zip
inst/app/predefinedModels/Five_Sources_Data.zip
inst/app/predefinedModels/Five_Sources_Model.resources
inst/app/predefinedModels/Roman_Data.zip
inst/app/predefinedModels/test_model.resources
inst/app/server.R
inst/app/ui.R
inst/config.yaml
inst/dist/IsoMemoLogo.png
inst/dist/MPIlogo.png
inst/dist/custom.css
inst/dist/overlay.js
inst/dist/priorInput.js
inst/dist/priors.js
inst/dist/removeName.css
inst/dist/removeName.js
inst/dist/shinyMatrix.js
inst/dist/userEst.js
inst/dist/userEstimates.js
inst/htmlTemplate/help.html
inst/lives.xlsx
inst/nimbleCode/combineSources
inst/nimbleCode/combineSourcesBaseline
inst/nimbleCode/lhNorm
inst/nimbleCode/lhNormBase
inst/nimbleCode/lhNormInd
inst/nimbleCode/lhNormSingle
inst/nimbleCode/nimbleTemplate
inst/nimbleCode/priorAlphaAll
inst/nimbleCode/priorAlphaAllHierarchical
inst/nimbleCode/priorAlphaAllHierarchicalFixed
inst/nimbleCode/priorAlphaAllHierarchicalInflatedBeta
inst/nimbleCode/priorAlphaAllHierarchicalInflatedBetaFixed
inst/nimbleCode/priorAlphaAllHierarchicalNumericBetaFF
inst/nimbleCode/priorAlphaAllHierarchicalNumericBetaRF
inst/nimbleCode/priorAlphaAllHierarchicalNumericBetaRR
inst/nimbleCode/priorAlphaAllHierarchicalNumericFF
inst/nimbleCode/priorAlphaAllHierarchicalNumericRF
inst/nimbleCode/priorAlphaAllHierarchicalNumericRR
inst/nimbleCode/priorAlphaAllInflatedBeta
inst/nimbleCode/priorAlphaAllNumericFixed
inst/nimbleCode/priorAlphaSingle
inst/nimbleCode/priorAlphaSingleInflatedBeta
inst/nimbleCode/priorConcentrations
inst/nimbleCode/priorConcentrationsInd
inst/nimbleCode/priorConcentrationsIndMult
inst/nimbleCode/priorConcentrationsMult
inst/nimbleCode/priorNorm
inst/nimbleCode/priorOffsets
inst/nimbleCode/priorOffsetsInd
inst/nimbleCode/priorSourceOffsets
inst/nimbleCode/priorSourceOffsetsBaseline
inst/nimbleCode/priorSourceOffsetsInd
inst/nimbleCode/priorSources
inst/nimbleCode/priorSourcesBaseline
inst/nimbleCode/priorSourcesInd
inst/nimbleCode/priorSourcesLogNorm
inst/nimbleCode/priorSourcesLogNormBaseline
inst/nimbleCode/priorSourcesLogNormInd
inst/nimbleCode/priorSourcesMulti
inst/nimbleCode/priorSourcesMultiBaseline
inst/nimbleCode/priorSourcesMultiInd
inst/nimbleCode/priorWeights
inst/nimbleCode/priorWeightsInd
libLinux/.gitignore
libMac/.gitignore
libWin/.gitignore
man/checkClass.Rd
man/checkData.Rd
man/checkDataDimensions.Rd
man/checkDataNameConsistency.Rd
man/checkDim.Rd
man/checkIndividualNames.Rd
man/checkLength.Rd
man/checkModelOptions.Rd
man/checkNames.Rd
man/checkPriors.Rd
man/checkUserEstimates.Rd
man/checkValueNames.Rd
man/compileRunModel.Rd
man/componentsServer.Rd
man/componentsUI.Rd
man/concentrationsServer.Rd
man/concentrationsUI.Rd
man/config.Rd
man/createDummyMatrix.Rd
man/createModel.Rd
man/createModelCode.Rd
man/createNameEvents.Rd
man/createOxCalText.Rd
man/deleteTableFromList.Rd
man/exportCSV.Rd
man/exportFilename.Rd
man/exportJSON.Rd
man/exportXLSX.Rd
man/extractContributionLimit.Rd
man/extractPotentialCat.Rd
man/extractPotentialNumerics.Rd
man/fillValuesFromUpload.Rd
man/fixMatrixCols.Rd
man/fruits.Rd
man/fruitsTab.Rd
man/fruitsUI.Rd
man/getDepthAndTable.Rd
man/getFractionNames.Rd
man/getHelp.Rd
man/getLoop.Rd
man/getResultStatistics.Rd
man/getSourceNames.Rd
man/isDeepestEntry.Rd
man/isPreDeepestEntry.Rd
man/isoInstalled.Rd
man/processNameEvents.Rd
man/readString.Rd
man/readStringWrapper.Rd
man/readSystemFile.Rd
man/removeLine.Rd
man/shinyInputToClass.Rd
man/sourcesServer.Rd
man/sourcesUI.Rd
man/startApplication.Rd
man/targetValuesServer.Rd
man/targetValuesUI.Rd
man/updateListNames.Rd
man/updateObsvnsInLists.Rd
man/updateObsvnsOfEntry.Rd
man/updateTargetsInLists.Rd
mpi-FRUITS.Rproj
tests/testthat.R
tests/testthat/batch_covariance.csv
tests/testthat/blackBearData_baselineModel.rds
tests/testthat/blackBearData_default.rds
tests/testthat/brownBearData_default.rds
tests/testthat/dataUpload_complete.rds
tests/testthat/dataUpload_emptyInput.rds
tests/testthat/dataWithPriors_default.rds
tests/testthat/fiveSourcesData_default.rds
tests/testthat/helpers.R
tests/testthat/oxcal_aquatic_curve.txt
tests/testthat/romanData_default.rds
tests/testthat/sources.xlsx
tests/testthat/test-00_codeStyle.R
tests/testthat/test-02-modules-data.R
tests/testthat/test-02-outputPlot.R
tests/testthat/test-03-readString.R
tests/testthat/test-04-modelSummary.R
tests/testthat/test-04-modelSummary_dataExmpl.rds
tests/testthat/test-04-modelSummary_dataUser.rds
tests/testthat/test-class-constructor.R
tests/testthat/test-class-elements.R
tests/testthat/test-class-utils.R
tests/testthat/test-compileRunModel.R
tests/testthat/test-defaults.R
tests/testthat/test-doubleMatrix.R
tests/testthat/test-extend.R
tests/testthat/test-fillFromUpload.R
tests/testthat/test-matrixHelpers.R
tests/testthat/test-model.R
tests/testthat/test-nameEvents.R
tests/testthat/test-oxcal.R
tests/testthat/test-oxcalData.rds
tests/testthat/test-oxcalModelData.rds
tests/testthat/test-setCovNames.R
tests/testthat/test-shinyInputToClass.R
tests/testthat/test-updateArray.R
tests/testthat/test-updateListNames.R
tests/testthat/test-validatePrior.R
tests/testthat/test-validateUserEstimate.R
