Description Usage Arguments Value
Pool FCS files and cluster them
1 2 3 4 5 6 7 8 9 10 11 12 | cluster_fcs_files_groups(
files.list,
num.cores,
col.names,
num.clusters,
asinh.cofactor,
num.samples = 50,
downsample.to = 0,
output.dir = ".",
negative.values = "truncate",
quantile.prob = 0.05
)
|
files.list |
A named list of vectors detailing how the files should be pooled before clustering. Files in the same vector will be pooled together. The name of the output is going to correspond to the name of the corresponding list element. |
num.cores |
Number of CPU cores to use |
col.names |
A vector of column names indicating which columns should be used for clustering |
num.clusters |
The desired number of clusters |
asinh.cofactor |
Cofactor for |
num.samples |
Number of samples to be used for the CLARA algorithm (see |
downsample.to |
The number of events that should be randomly sampled from each file before pooling. If this is 0, no sampling is performed |
output.dir |
The name of the output directory, it will be created if it does not exist |
negative.values |
How to deal with negative values in the data. If this is
|
quantile.prob |
Only used if |
Returns either NULL
or a try-error
object if some error occurred during the computation
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