inst/MD/intro.md

In PascalCrepey/HospiCoV: HospiCoV

To use run the model for a specific country, you must provide the following inputs:

• Pre-infected table: a table with a number of infected cases by location (it can be a unique location)
• Population table: a table of the age-stratified population for each location. The population must be stratified into the same 17 age groups as the contact matrix.

Age-specific contact matrices are made available for 152 countries by Prem et al.

The tables must follow a specific format for the model to run:

• Pre-infected table must have three columns (case sensitive):
• "Region": a name of region, or location
• "Date": must be identical for all rows, and in ISO-8601 format: "YYYY-MM-DD" (e.g. 2020-03-10)

• "preInfected": an integer, the number of infected cases.

• Population table must have 18 columns:

• one column "Region", which matches the column "Region" of the Pre-infected table
• 17 columns corresponding to the 17 age groups below, with the corresponding population for each region

Age groups: 0-4, 5-9, 10-14, 15-19, 20-24, 25-29, 30-34, 35-39, 40-44, 45-49, 50-54, 55-59, 60-64, 65-69, 70-74, 75-79, 80P

PascalCrepey/HospiCoV documentation built on April 11, 2020, 3:13 p.m.