Files in PatrickLeBlanc/LTNLDA
An implementation of a collapsed blocked Gibbs Sampler for the LTN-LDA model
.Rbuildignore
.Rhistory
.gitignore
DESCRIPTION
LICENSE.md
LTNLDA.Rproj
NAMESPACE
R/Gibbs_Sampler.R
R/Gibbs_Sampler_Cov.R
R/Gibbs_Sampler_Perp.R
R/RcppExports.R
R/Summary.R
R/data.R
R/f_pg.R
README.Rmd
README.md
data-raw/abt.R
data-raw/abt.rda
data/ps.rda
inst/CITATION
man/LTNLDA-package.Rd
man/LTNLDA.Rd
man/LTNLDA_Perplexity.Rd
man/LTN_Gibbs_C.Rd
man/LTN_Gibbs_Perp_C.Rd
man/Summary.Rd
man/block_LTNLDA.Rd
man/f_pg.Rd
man/ps.Rd
src/C_Functions.cpp
src/C_Functions.o
src/LTNLDA.dll
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/RcppExports.o
src/rcpparma_hello_world.o
vignettes/.gitignore
vignettes/LTN-LDA.Rmd
vignettes/LTN-LDA_cache/html/__packages
vignettes/LTN-LDA_cache/html/chain_mu_4312767038733dfc15b984c79b8a0cdd.RData
vignettes/LTN-LDA_cache/html/chain_mu_4312767038733dfc15b984c79b8a0cdd.rdb
vignettes/LTN-LDA_cache/html/chain_mu_4312767038733dfc15b984c79b8a0cdd.rdx
vignettes/LTN-LDA_cache/html/chain_phi_b3a4f56d264cc8ed5c98823358291d17.RData
vignettes/LTN-LDA_cache/html/chain_phi_b3a4f56d264cc8ed5c98823358291d17.rdb
vignettes/LTN-LDA_cache/html/chain_phi_b3a4f56d264cc8ed5c98823358291d17.rdx
vignettes/LTN-LDA_cache/html/chain_psi_cd94ec629d99c82f64c59590a14edde2.RData
vignettes/LTN-LDA_cache/html/chain_psi_cd94ec629d99c82f64c59590a14edde2.rdb
vignettes/LTN-LDA_cache/html/chain_psi_cd94ec629d99c82f64c59590a14edde2.rdx
vignettes/LTN-LDA_cache/html/chain_sigma_8a8b91c173a2bc28893022bcdfa0358d.RData
vignettes/LTN-LDA_cache/html/chain_sigma_8a8b91c173a2bc28893022bcdfa0358d.rdb
vignettes/LTN-LDA_cache/html/chain_sigma_8a8b91c173a2bc28893022bcdfa0358d.rdx
vignettes/LTN-LDA_cache/html/final_iterate_counts_41311bddf20b154de0d4146af1ee87e7.RData
vignettes/LTN-LDA_cache/html/final_iterate_counts_41311bddf20b154de0d4146af1ee87e7.rdb
vignettes/LTN-LDA_cache/html/final_iterate_counts_41311bddf20b154de0d4146af1ee87e7.rdx
vignettes/LTN-LDA_cache/html/load_data_1e4b8ffbc65d8f5af32de8f2e38b812d.RData
vignettes/LTN-LDA_cache/html/load_data_1e4b8ffbc65d8f5af32de8f2e38b812d.rdb
vignettes/LTN-LDA_cache/html/load_data_1e4b8ffbc65d8f5af32de8f2e38b812d.rdx
vignettes/LTN-LDA_cache/html/load_otu_decd33f081d5e5c6c0a637756dda44d7.RData
vignettes/LTN-LDA_cache/html/load_otu_decd33f081d5e5c6c0a637756dda44d7.rdb
vignettes/LTN-LDA_cache/html/load_otu_decd33f081d5e5c6c0a637756dda44d7.rdx
vignettes/LTN-LDA_cache/html/load_phy_tree_1451d73eeeeafb9fe77dc992d3de5002.RData
vignettes/LTN-LDA_cache/html/load_phy_tree_1451d73eeeeafb9fe77dc992d3de5002.rdb
vignettes/LTN-LDA_cache/html/load_phy_tree_1451d73eeeeafb9fe77dc992d3de5002.rdx
vignettes/LTN-LDA_cache/html/mean_post_beta_k_ad0ef147fdc4393db365acb00c348bf2.RData
vignettes/LTN-LDA_cache/html/mean_post_beta_k_ad0ef147fdc4393db365acb00c348bf2.rdb
vignettes/LTN-LDA_cache/html/mean_post_beta_k_ad0ef147fdc4393db365acb00c348bf2.rdx
vignettes/LTN-LDA_cache/html/mean_post_beta_kd_fef2ba30ff3f0085853830bf792bb22c.RData
vignettes/LTN-LDA_cache/html/mean_post_beta_kd_fef2ba30ff3f0085853830bf792bb22c.rdb
vignettes/LTN-LDA_cache/html/mean_post_beta_kd_fef2ba30ff3f0085853830bf792bb22c.rdx
vignettes/LTN-LDA_cache/html/mean_post_mu_3ca27cb486dfe565361bf1e898fb18d8.RData
vignettes/LTN-LDA_cache/html/mean_post_mu_3ca27cb486dfe565361bf1e898fb18d8.rdb
vignettes/LTN-LDA_cache/html/mean_post_mu_3ca27cb486dfe565361bf1e898fb18d8.rdx
vignettes/LTN-LDA_cache/html/mean_post_phi_0f10f0e68e9973c921f3f1c9136abc58.RData
vignettes/LTN-LDA_cache/html/mean_post_phi_0f10f0e68e9973c921f3f1c9136abc58.rdb
vignettes/LTN-LDA_cache/html/mean_post_phi_0f10f0e68e9973c921f3f1c9136abc58.rdx
vignettes/LTN-LDA_cache/html/mean_post_psi_pdk_085b19dd8d1d285ee5a4b2329faeb152.RData
vignettes/LTN-LDA_cache/html/mean_post_psi_pdk_085b19dd8d1d285ee5a4b2329faeb152.rdb
vignettes/LTN-LDA_cache/html/mean_post_psi_pdk_085b19dd8d1d285ee5a4b2329faeb152.rdx
vignettes/LTN-LDA_cache/html/mean_post_sigma_a1f2abb077475e35989fd7c240590fc5.RData
vignettes/LTN-LDA_cache/html/mean_post_sigma_a1f2abb077475e35989fd7c240590fc5.rdb
vignettes/LTN-LDA_cache/html/mean_post_sigma_a1f2abb077475e35989fd7c240590fc5.rdx
vignettes/LTN-LDA_cache/html/run_ltnlda_84123099cccef4c4f3098290733578f9.RData
vignettes/LTN-LDA_cache/html/run_ltnlda_84123099cccef4c4f3098290733578f9.rdb
vignettes/LTN-LDA_cache/html/run_ltnlda_84123099cccef4c4f3098290733578f9.rdx
vignettes/LTN-LDA_cache/html/shrink_ps_30a4d7d7b9369c6414ab2073265dec87.RData
vignettes/LTN-LDA_cache/html/shrink_ps_30a4d7d7b9369c6414ab2073265dec87.rdb
vignettes/LTN-LDA_cache/html/shrink_ps_30a4d7d7b9369c6414ab2073265dec87.rdx
vignettes/LTN-LDA_files/figure-html/chain_mu-1.png
vignettes/LTN-LDA_files/figure-html/chain_phi-1.png
vignettes/LTN-LDA_files/figure-html/chain_psi-1.png
vignettes/LTN-LDA_files/figure-html/chain_sigma-1.png
vignettes/Perplexity.Rmd
vignettes/Perplexity_cache/html/__packages
vignettes/Perplexity_cache/html/load_data_06b6977f981ee076f07a93188e847f7e.RData
vignettes/Perplexity_cache/html/load_data_06b6977f981ee076f07a93188e847f7e.rdb
vignettes/Perplexity_cache/html/load_data_06b6977f981ee076f07a93188e847f7e.rdx
vignettes/Perplexity_cache/html/load_otu_979f91b0fd8921d6a3aebcf1caf55b0d.RData
vignettes/Perplexity_cache/html/load_otu_979f91b0fd8921d6a3aebcf1caf55b0d.rdb
vignettes/Perplexity_cache/html/load_otu_979f91b0fd8921d6a3aebcf1caf55b0d.rdx
vignettes/Perplexity_cache/html/load_phy_tree_6ac0adeb3750d6de2f43755c149d552e.RData
vignettes/Perplexity_cache/html/load_phy_tree_6ac0adeb3750d6de2f43755c149d552e.rdb
vignettes/Perplexity_cache/html/load_phy_tree_6ac0adeb3750d6de2f43755c149d552e.rdx
vignettes/Perplexity_cache/html/make_train_test_9046a46d8c1ed62c7f12d5c0bd8cbc66.RData
vignettes/Perplexity_cache/html/make_train_test_9046a46d8c1ed62c7f12d5c0bd8cbc66.rdb
vignettes/Perplexity_cache/html/make_train_test_9046a46d8c1ed62c7f12d5c0bd8cbc66.rdx
vignettes/Perplexity_cache/html/run_ltnlda_de046ee98853a5ce8ad06460d60a712f.RData
vignettes/Perplexity_cache/html/run_ltnlda_de046ee98853a5ce8ad06460d60a712f.rdb
vignettes/Perplexity_cache/html/run_ltnlda_de046ee98853a5ce8ad06460d60a712f.rdx
vignettes/Perplexity_cache/html/run_perp_d711356d08e7e93b82eb8137bcc4c3f5.RData
vignettes/Perplexity_cache/html/run_perp_d711356d08e7e93b82eb8137bcc4c3f5.rdb
vignettes/Perplexity_cache/html/run_perp_d711356d08e7e93b82eb8137bcc4c3f5.rdx
vignettes/Perplexity_cache/html/shrink_ps_60395f35850e47abb8cfff6788b788f1.RData
vignettes/Perplexity_cache/html/shrink_ps_60395f35850e47abb8cfff6788b788f1.rdb
vignettes/Perplexity_cache/html/shrink_ps_60395f35850e47abb8cfff6788b788f1.rdx
vignettes/Perplexity_files/figure-html/chain_phi-1.png
vignettes/Perplexity_files/figure-html/chain_psi-1.png
