bathy | Southern Newfoundland bathymetry |
convert_N | Convert abundance-at-age matrix to abundance-at-length |
dot-Q | Helper function to generate precision matrix Q for simulation |
error_stats | Calculate common error statistics |
expand_surveys | Set-up a series of surveys from all combinations of settings... |
fibonacci | Generate Fibonacci sequence |
group_lengths | Convert length to length group |
icc | Calculate intraclass correlation |
land | Southern Newfoundland coastline |
make_grid | Make a depth stratified survey grid |
make_mesh | Make an R-INLA mesh based off a grid |
object_size | Print object size |
plot_trend | Simple plotting functions |
reexports | Objects exported from other packages |
round_sim | Round simulated population |
run_strat | Run stratified analysis on simulated data |
sim_abundance | Simulate basic population dynamics model |
sim_ays_covar | Simulate age-year-space covariance |
sim_ays_covar_spde | Simulate age-year-space covariance using SPDE approach |
sim_distribution | Simulate spatial and temporal distribution |
sim_logistic | Closure for simulating logistic curve |
sim_nlf | Define a non-linear relationship |
sim_parabola | Define a parabolic relationship |
sim_R | Simulate starting abundance, random recruitment and total... |
sim_sets | Simulate survey sets |
sim_survey | Simulate stratified-random survey |
sim_survey_parallel | Simulate stratified random surveys using parallel computation |
sim_vonB | Closure for simulating length given age using von Bertalanffy... |
strat_data | Prepare simulated data for stratified analysis |
strat_error | Calculate error of stratified estimates |
strat_means | Calculate stratified means, variances and confidence... |
survey_grid | Sample survey simulation grid. |
survey_lite_mesh | Lite sample survey mesh and related items |
survey_mesh | Sample survey meshes and related items |
test_surveys | Test sampling design of multiple surveys using a stratified... |
vis_sim | Make a flexdashboard for visualizing the simulation |
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