README.md

In PaulingLiu/ROGUE: ROGUE (Ratio of Global Unshifted Entropy)

ROGUE (Ratio of Global Unshifted Entropy)

Contents

• Overview
• Installation Guide
• Tutorial
• Reproduction instructions
• License
• Citation
• Contact

Overview

Often, it is not even clear whether a given cluster is uniform in unsupervised scRNA-seq data analyses. Here, we proposed the concept of cluster purity and introduced a conceptually novel statistic, named ROGUE, to examine whether a given cluster is a pure cell population.

Installation Guide

Installing dependency package Before installing ROGUE, the “tidyverse” package should be installed first:

install.packages("tidyverse")

Installing ROGUE To install ROGUE, run:

if (!requireNamespace("devtools", quietly = TRUE)) install.packages("devtools")
devtools::install_github("PaulingLiu/ROGUE")

Tutorial

For more details and basic usage see following tutorials: 1. Guided Tutorial (It takes a few seconds to load the HTML file)

Reproduction instructions

The scripts for producing all the quantitative results in our manuscript can be found in scripts.

Citation

If you use ROGUE in your research, please considering citing: - Liu et al., Nature Communications 2020

Contact

Please contact us: Baolin Liu: [e-mail] Zemin Zhang: [e-mail]

Copyright

©2019 Baolin Liu, Chenwei Li. Zhang Lab. All rights reserved.

PaulingLiu/ROGUE documentation built on June 28, 2020, 9:40 p.m.