plotMarkerHeatmap: Generate a heatmap showing top n marker expression per cell...
In PavlidisLab/patchSeqQC: Quality Control for Patch Seq Data Using Marker Genes
Description
Usage
Arguments
Value
Description
Generate a heatmap showing top n marker expression per cell type per patch seq dataset
Usage
1
2
plotMarkerHeatmap(markerlist, expr_matrix, show_legend = T,
show_cell_labels = F)
Arguments
markerlist
list of lists with marker genes per cell type
expr_matrix
gene expression matrix (samples x genes)
show_legend
boolean to show gene expression heatmap legend
show_cell_labels
boolean to show cell labels
Value
a pheatmap object with resulting heatmap
PavlidisLab/patchSeqQC documentation built on May 20, 2019, 9:13 p.m.
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Description Usage Arguments Value
Description
Generate a heatmap showing top n marker expression per cell type per patch seq dataset
Usage
1 2 | plotMarkerHeatmap(markerlist, expr_matrix, show_legend = T,
show_cell_labels = F)
|
Arguments
markerlist |
list of lists with marker genes per cell type |
expr_matrix |
gene expression matrix (samples x genes) |
show_legend |
boolean to show gene expression heatmap legend |
show_cell_labels |
boolean to show cell labels |
Value
a pheatmap object with resulting heatmap
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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