DEAnalysisMAST: Calculates differentially expressed genes between each cell...
In PelzKo/dwls: Dampened Weighted Least Square for Deconvolution of Bulk mRNA Data
Description
Usage
Arguments
Value
Examples
Description
Finds differentially expressed genes between cell types using the MAST's lrTest function.
Saves differential expression information to specified path, in the form of a matrix
for each cell type. This is used by the buildSignatureMatrixMAST function in DWLS.
Usage
1
DEAnalysisMAST(scdata, id, path)
Arguments
scdata
Gene by cell single-cell data matrix.
id
List containing cell type ids corresponding to each column of the scdata
path
String corresponding to path in which to save DE information.
Value
Saves DE information to specified path, in the form of a matrix for each cell type.
Examples
1
DEAnalysisMAST(scdata, id, path)
PelzKo/dwls documentation built on Dec. 18, 2021, 6:46 a.m.
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Description Usage Arguments Value Examples
Description
Finds differentially expressed genes between cell types using the MAST's lrTest function. Saves differential expression information to specified path, in the form of a matrix for each cell type. This is used by the buildSignatureMatrixMAST function in DWLS.
Usage
1 | DEAnalysisMAST(scdata, id, path)
|
Arguments
scdata |
Gene by cell single-cell data matrix. |
id |
List containing cell type ids corresponding to each column of the |
path |
String corresponding to path in which to save DE information. |
Value
Saves DE information to specified path, in the form of a matrix for each cell type.
Examples
1 | DEAnalysisMAST(scdata, id, path)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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