Files in PengfanZhang/Rbec
Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities
.gitignore
DESCRIPTION
NAMESPACE
R/Rbec.R
R/Rbec_summarise.R
R/RcppExports.R
R/abundance_probability.R
R/consistent_error_matrix.R
R/error_matrix_multicore.R
R/loessErr_modified.R
R/transition_matrix.R
README.md
Rbec_workflow.png
inst/.DS_Store
inst/extdata/contamination_test/sample_1/rbec.out
inst/extdata/contamination_test/sample_10/rbec.out
inst/extdata/contamination_test/sample_11/rbec.out
inst/extdata/contamination_test/sample_2/rbec.out
inst/extdata/contamination_test/sample_3/rbec.out
inst/extdata/contamination_test/sample_4/rbec.out
inst/extdata/contamination_test/sample_5/rbec.out
inst/extdata/contamination_test/sample_6/rbec.out
inst/extdata/contamination_test/sample_7/rbec.out
inst/extdata/contamination_test/sample_8/rbec.out
inst/extdata/contamination_test/sample_9/rbec.out
inst/extdata/rbec_test.list
inst/extdata/test_raw_merged_reads.fastq.gz
inst/extdata/test_ref.fasta
inst/include/Rbec.h
inst/include/Rbec_RcppExports.h
inst/scripts/rawdata_description
man/Contam_detect.Rd
man/Rbec.Rd
src/RcppExports.cpp
src/dada.h
src/kmer_dist.cpp
src/rcpp_test.cpp
testdata/reference_full.fasta
testdata/test_R1.fastq.gz
testdata/test_R2.fastq.gz
vignettes/.gitignore
vignettes/Rbec.Rmd
