Man pages for PennStateDEPENdLab/fitclock
An R package to fit RT and Reward behavioral data from Michael Frank clock task.

autocorrPrevRTlambda: autocorrelation with previous timepoint.
betaFastSlowbeta distribution worker class (handled as environment shared...
build_design_matrixCreate fmri design matrix for AFNI, FSL, or internal...
clockdata_group-classdataset object for group-level data (multiple subjects with...
clockdata_run-classdataset object for run-level data (multiple trials)
clockdata_subject-classdataset object for subject-level data (multiple runs within a...
clock_fit-classan object to store the results of a model being fit to a...
clock_modelObject-oriented implementation of the Frank clock algorithm.
clocksubject_1000clocksubject_1000
clocksubject_fMRI_008jhClock behavioral data for 400 trials across 8 fMRI runs from...
concatDesignRunsConcatenate design matrices for each run to form a single...
deltavalue_modelSimple delta rule model for learning expected value across...
detrendtsdetrend time series up to quadratic trend. Used by...
exploreBetaepsilon: adapt to fast/slow responses in proportion to...
fir1Bandpassfunction to FIR-1 bandpass filter a signal. Can low- or...
fitclockR package to fit data from variants of Michael Frank clock...
fmri.stimulusconvolve a regressor with a hemodynamic response function for...
getRTUpdategeneral dispatch of RT prediction for a parameter
getRTUpdate.defaultdefault RT prediction method for a parameter (not used)
getRTUpdate.p_autocorrPrevRTCompute reaction time contribution for lambda (autocorr with...
getRTUpdate.p_epsilonBetaCompute reaction time contribution for epsilon (explore)
getRTUpdate.p_goCompute reaction time contribution for go (speedup for PPE)
getRTUpdate.p_goldCompute reaction time contribution for nu (adapt toward best...
getRTUpdate.p_meanRTCompute reaction time contribution for K (baseline response...
getRTUpdate.p_meanSlowFastCompute reaction time contribution for rho (slow-fast mean...
getRTUpdate.p_nogoCompute reaction time contribution for noGo (slowdown for...
getRTUpdate.p_regressMeanCompute reaction time contribution for xi (regress to mean...
getRTUpdate.p_revMomentumCompute reaction time contribution for gamma (reverse...
getRTUpdate.p_stickyChoiceCompute reaction time contribution for stickyChoice (weight...
getThetainternal function to lookup the correct value of theta when a...
gogo: speedup of RT for positive prediction error.
goForGoldgoForGold: adapt RT toward the best reward thus far.
hrf_convolve_normalizeconvolve a regressor with a normalized HRF with peak...
initialize_parhelper function to check parameter values and bounds at...
meanRTK: baseline response speed parameter.
meanSlowFastrho: Adapt toward fast responses if these have been better...
noGonoGo: slowdown of RT for negative prediction error.
reset_workspaceGeneric dispatch to reset relevant variables in the workspace...
reset_workspace.paramGeneric reset method for all parameters.
reset_workspace.p_epsilonBetareset workspace for epsilonBeta parameter
reset_workspace.p_goreset workspace for go parameter
reset_workspace.p_goldreset workspace for goForGold parameter
reset_workspace.p_meanSlowFastreset workspace for rho parameter
reset_workspace.p_nogoreset workspace for noGo parameter
reset_workspace.p_stickyChoicereset workspace for stickyChoice parameter
revMomentumgamma: reverse momentum parameter, adjust RTs incrementally...
runmeancompute a moving average smooth over a time series (here, a...
stickyChoicestickyChoice: weight and decay parameters to scale effect of...
updateBetaDistsupdates counts of beta distributions for fast and slow...
visualizeDesignMatrixVisualize design matrix, including event onset times and run...
PennStateDEPENdLab/fitclock documentation built on July 19, 2017, 2:04 p.m.